bd0945ac583598387ea83c8b3c20593bd934b06a
markd
  Sat Sep 25 16:29:23 2021 -0700
reload V38 with new changes

diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt
index b4c01b6..844eef5 100644
--- src/hg/makeDb/doc/hg38/gencode.txt
+++ src/hg/makeDb/doc/hg38/gencode.txt
@@ -858,16 +858,24 @@
     # Update 'Release Notes' (for final)
     # human/hg38/wgEncodeGencodeSuper.html
 
     # edit human/hg38/trackDb.gencode.ra to add new .ra file include
     jkmake DBS=hg38
 
     # edit all.joiner to add ~/tmp/gencodeV38.joiner
     # verify with:
     pushd /hive/data/genomes/hg38/bed/gencodeV38/hgcImport
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # check tracks in browser sandbox
     # commit all
     jkmake DBS=hg38 alpha
     # if pushing public: create ticket and MARK QA READY
+
+2021-09-25:
+    It was discovered that most of the alt/patch sequence were missing
+    this was due switching over to use the ensemblToUcsc table to map
+    GENCODE chromosome names for mm39 pre-release.  The code was modified
+    to use the assembly report to make the chromosome names and the
+    track rebuilt.
+    
 #########################################################################