Commits for braney

v420_base to v421_preview (2021-09-07 to 2021-09-13) v421

8dae6ccad320bbf99332a5b238cdda8c061c7d3d Tue Sep 7 16:50:41 2021 -0700

• add fast lookup for archived V36
  • src/hg/makeDb/trackDb/human/hg38/oldKnownGene.ra - lines changed 8, context: html, text, full: html, text

4fc2a6702672293eb09e5a4c951b2f6d16257e5f Tue Sep 7 17:13:11 2021 -0700

• try to avoid the SNP disambiguation page on search results.
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 40, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 35, context: html, text, full: html, text

d1377e8f79200627fd93012f73e32bdd0ae2de5f Thu Sep 9 13:22:39 2021 -0700

• use filterLabel for text filters instead of field name
  • src/hg/lib/hui.c - lines changed 2, context: html, text, full: html, text

a6fc30fa49ef07dc75cdeff0423b7b70fe28889d Thu Sep 9 13:53:50 2021 -0700

• oops.. a little polish on the previous commit
  • src/hg/lib/hui.c - lines changed 11, context: html, text, full: html, text

038d6e68ca59681d6cf608de90cfd7e1b8cb9c98 Thu Sep 9 17:30:45 2021 -0700

• adding MANE v 0.95
  • src/hg/makeDb/doc/hg38/mane.txt - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/mane.alpha.html - lines changed 46, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/mane.alpha.ra - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

bcf2010d5334ef0a63b0bfd07f528380960988cb Fri Sep 10 16:32:42 2021 -0700

• add shortCircuit back to snpedia and gwasCatalog
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 2, context: html, text, full: html, text

a2fba51d8eda61736f4c5cf2e40bc7fc12a9e5ee Sat Sep 11 07:26:05 2021 -0700

• rebuilt V38 mafGene downloads for hg38
  • src/hg/makeDb/doc/hg38/multiz100way.txt - lines changed 13, context: html, text, full: html, text

a58598681583d3b1637c0a9fcd25610bdf2b6566 Sat Sep 11 07:27:43 2021 -0700

• some cleanup of this old doc file
  • src/hg/makeDb/doc/ucscGenes/hg38.gencodeV36.sh - lines changed 5, context: html, text, full: html, text

e324c30e7ce5e418400c3123ac3343b58704f3f7 Sat Sep 11 07:28:28 2021 -0700

• ongoing work on knownGene V38
  • src/hg/utils/otto/knownGene/buildCore.sh - lines changed 6, context: html, text, full: html, text

3e8fa8ff297998d1d7541ce2c30318cede07c839 Mon Sep 13 07:47:56 2021 -0700

• skip some fields on the hgc page for MANE
  • src/hg/makeDb/trackDb/human/hg38/mane.alpha.ra - lines changed 1, context: html, text, full: html, text

141e054d12c8225efd762bf56ccf6fb5179c738b Mon Sep 13 07:49:28 2021 -0700

• add bigGenePred to skipFields
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text

6c71aade20591b09be29f6fa38e420c7f91ba18b Mon Sep 13 07:52:31 2021 -0700

• temporarily remove search rule for knownGene archive as it is interfering with the "real" track
  • src/hg/makeDb/trackDb/human/hg38/oldKnownGene.ra - lines changed 7, context: html, text, full: html, text