aad219b68b73b72b0e1ef012d91081b21f42158f kuhn Thu Sep 9 15:24:39 2021 -0700 moved query bozes above the fold to be more obvious diff --git src/hg/htdocs/goldenPath/help/hgTracksHelp.html src/hg/htdocs/goldenPath/help/hgTracksHelp.html index 09ed9e7..d3dcf6c 100755 --- src/hg/htdocs/goldenPath/help/hgTracksHelp.html +++ src/hg/htdocs/goldenPath/help/hgTracksHelp.html @@ -1,76 +1,86 @@

Genome Browser User Guide

Contents

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What does the Genome Browser do?
Configuring the Genome Browser display
Annotation track descriptions
Using BLAT alignments
Getting Started with:
DNA text formatting
Converting data between assemblies
Downloading genome data
Creating and managing custom annotation tracks
Getting started on Track Hubs
Track Hubs in a single file
Using the VisiGene Image Browser
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Search the Genome Browser help pages:  

Search the entire Genome Browser website:  

Browse the Genome Browser mailing list.

Questions and feedback are welcome.

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What does the Genome Browser do?

As vertebrate genome sequences near completion and research re-focuses on their analysis, the issue of effective sequence display becomes critical: it is not helpful to have 3 billion letters of genomic DNA shown as plain text! As an alternative, the UCSC Genome Browser provides a rapid and reliable display of any requested portion of genomes at any scale, together with dozens of aligned annotation tracks (known genes, predicted genes, ESTs, mRNAs, CpG islands, assembly gaps and coverage, chromosomal bands, mouse homologies, and more). Half of the annotation tracks are computed at UCSC from publicly available sequence data. The remaining tracks are provided by collaborators worldwide. Users can also add their own custom tracks to the browser for educational or research purposes.

The Genome Browser stacks annotation tracks beneath genome coordinate positions, allowing rapid