ffb371e4dab8c6c689bc4b9d6bc8b95806deb91e kuhn Thu Sep 9 17:12:56 2021 -0700 moved search box up closer to top of page diff --git src/hg/htdocs/goldenPath/help/multiRegionHelp.html src/hg/htdocs/goldenPath/help/multiRegionHelp.html index 0ca7775..0fdc135 100755 --- src/hg/htdocs/goldenPath/help/multiRegionHelp.html +++ src/hg/htdocs/goldenPath/help/multiRegionHelp.html @@ -1,57 +1,66 @@ <!DOCTYPE html> <!--#set var="TITLE" value="Genome Browser Multi-Region" --> <!--#set var="ROOT" value="../.." --> <!-- Relative paths to support mirror sites with non-standard GB docs install --> <!--#include virtual="$ROOT/inc/gbPageStart.html" --> <h1>Multi-Region Display Help</h1> <h2>Contents</h2> +<div class="row"> +<div class="col-md-4"> + <h6><a href="#Intro">Introduction</strong></a></h6> <h6><a href="#GetStarted">Getting started with Multi-Region View</a></h6> <h6><a href="#About">About the Multi-Region modes</a></h6> <ul> <li><a href="#ExonOnly"><strong>Exon only</strong></a></li> <li><a href="#GeneOnly"><strong>Gene only</strong></a></li> <li><a href="#CustomRegions"><strong>Custom regions</strong></a></li> <li><a href="#Haplotype"><strong>Haplotype view</strong></a></li> </ul> <h6><a href="#Videos">Video demonstrations of Multi-Region modes</a></h6> <ul> <li><a href="#ExonOnlyVid"><strong>Exon only</strong></a></li> <li><a href="#CustomRegionsVid"><strong>Custom regions</strong></a></li> <li><a href="#HaplotypeVid"><strong>Haplotype view</strong></a></li> </ul> <h6><a href="#Examples">Examples</a></h6> -<hr> + + </div> +<div class="col-md-8"> + <form name="googleForm1" method="GET" action="http://www.google.com/search" onSubmit="document.googleForm1.q.value=document.googleForm1.qq.value+ ' site:genome.ucsc.edu/goldenPath/help';"> <p> Search the Genome Browser help pages: <input type="hidden" name="q" value=""> <input type="hidden" name="num" value="10"> <input type="hidden" name="filter" value="0"> <input type=text name=qq size=30 maxlength=255 value=""> <input type="submit" value="Submit"> </form> </p> <p><a href="../../contacts.html">Questions and feedback are welcome</a>. + </div> +</div> + <a name="Intro"></a> <h2>Introduction</h2> <p> The multi-region display allows users to "slice" their track-viewing experience into a variety of different modes that focus the display on certain features: exon-only, gene-only, or user-defined BED coordinates. Only the portions of track annotations that fall within these displayed regions are shown; extraneous intergenic, intronic and otherwise unwanted regions are hidden from view.</p> <p> For human assemblies hg17 and later, the multi-region view also supports the replacement of a section of the reference genome with an alternate haplotype chromosome. This allows the user to view annotations upstream and downstream of the haplotype sequence, and visualize the haplotype in the general context of the reference chromosome.</p> <p> Using the multi-region display, one can: