aa80667780417df15ea62d143ac4c3ea8b5e9f8f lrnassar Mon Sep 13 15:47:29 2021 -0700 Minor tweaks to JASPAR html refs #27061 diff --git src/hg/makeDb/trackDb/human/jaspar.html src/hg/makeDb/trackDb/human/jaspar.html index 330e0fd..dfbfda7 100644 --- src/hg/makeDb/trackDb/human/jaspar.html +++ src/hg/makeDb/trackDb/human/jaspar.html @@ -110,44 +110,43 @@ colouring of the genome tracks and to allow for comparison of prediction confidence between different profiles.

Please refer to the JASPAR 2020 and 2018 publication for more details (citation below).

Data Access

JASPAR Transcription Factor Binding data can be explored interactively with the Table Browser and cross-referenced with Data Integrator. For programmatic access, the track can be accessed using the Genome Browser's REST API. JASPAR annotations can be downloaded from the Genome Browser's download server -as a bigBed file. This compressed binary format can be interacted with through -command line utilities. Please be aware that these download files are very large, -between 75Gb and 86Gb.

+as a bigBed file. This compressed binary format can be remotely queried through +command line utilities. Please note that some of the download files can be quite large.

All data are freely available. Additional resources are available directly from the JASPAR group:

Other Genomes

The JASPAR group provides TFBS predictions for many additional species and genomes, accessible by connection to their Public Hub or by clicking the assembly links below:

Species Genome assembly versions