aa80667780417df15ea62d143ac4c3ea8b5e9f8f lrnassar Mon Sep 13 15:47:29 2021 -0700 Minor tweaks to JASPAR html refs #27061 diff --git src/hg/makeDb/trackDb/human/jaspar.html src/hg/makeDb/trackDb/human/jaspar.html index 330e0fd..dfbfda7 100644 --- src/hg/makeDb/trackDb/human/jaspar.html +++ src/hg/makeDb/trackDb/human/jaspar.html @@ -110,44 +110,43 @@ colouring of the genome tracks and to allow for comparison of prediction confidence between different profiles.</p> <p> Please refer to the JASPAR 2020 and 2018 publication for more details (citation below).</p> <h2>Data Access</h2> <p> JASPAR Transcription Factor Binding data can be explored interactively with the <a href="../cgi-bin/hgTables">Table Browser</a> and cross-referenced with <a href="../cgi-bin/hgIntegrator">Data Integrator</a>. For programmatic access, the track can be accessed using the Genome Browser's <a href="../../goldenPath/help/api.html">REST API</a>. JASPAR annotations can be downloaded from the <a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/jaspar">Genome Browser's download server</a> -as a bigBed file. This compressed binary format can be interacted with through -command line utilities. Please be aware that these download files are very large, -between 75Gb and 86Gb.</p> +as a bigBed file. This compressed binary format can be remotely queried through +command line utilities. Please note that some of the download files can be quite large.</p> <p> All data are freely available. Additional resources are available directly from the JASPAR group:</p> <ul> <li>Binding site predictions for all and individual TF profiles are available for download at <a href="http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/" target="_blank">http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/</a>.</li> <li>Code and data used to create the UCSC tracks are available at -<a href="https://github.com/wassermanlab/JASPAR-UCSC-tracks"> +<a href="https://github.com/wassermanlab/JASPAR-UCSC-tracks" target="_blank"> https://github.com/wassermanlab/JASPAR-UCSC-tracks</a>.</li> <li>The underlying JASPAR motif data is available through the JASPAR website at <a href="http://jaspar.genereg.net" target="_blank">http://jaspar.genereg.net</a>.</li> </ul> <h2>Other Genomes</h2> <p>The JASPAR group provides TFBS predictions for many additional species and genomes, accessible by connection to their <a href="../cgi-bin/hgHubConnect?hubSearchTerms=jaspar&hgHub_do_search=on"> Public Hub</a> or by clicking the assembly links below:</p> <table width="458" border="1"> <tbody> <tr> <td><strong>Species</strong></td> <td><strong>Genome assembly versions</strong></td>