File Changes for angie

v422_preview2 to v422_base (2021-10-11 to 2021-10-18) v422

• src/hg/hgPhyloPlace/treeToAuspiceJson.c
  • lines changed 3, context: html, text, full: html, text
    3bff5347fbcb13f51d78425f0c53009cd466f8b8 Fri Oct 15 09:46:33 2021 -0700
    Auspice JSON: define ORF1ab not ORF1a/ORF1b as suggested by Cornelius Roemer in https://github.com/yatisht/usher/issues/174
• src/hg/hgPhyloPlace/writeCustomTracks.c
  • lines changed 23, context: html, text, full: html, text
    d170e9c72cc042ed0e1dccb657568b7fa14a17a1 Fri Oct 15 09:47:39 2021 -0700
    Instead of making super-long custom track names by concatenating sequence names, name the custom tracks after numbered subtrees since those are also displayed in the results table.
• src/hg/utils/otto/sarscov2phylo/util.sh
  • lines changed 4, context: html, text, full: html, text
    ad6e3b51842fe726bb9b14e3b0025e59ef9fda17 Fri Oct 15 09:48:41 2021 -0700
    More items for cleanGenBank to detect & substitute.