4e0ba60ac25fa6a44e6446852ce5c2aeda68d757 markd Fri Oct 15 17:18:43 2021 -0700 fixed gencode release date diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt index dff6696..c24a1d2 100644 --- src/hg/makeDb/doc/hg38/gencode.txt +++ src/hg/makeDb/doc/hg38/gencode.txt @@ -882,31 +882,31 @@ 2021-10-13: import of UCSC GENCODE group processing of GENCODE V39 for hgc all gencode (markd) # pre-release # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions # download, build and load tables mkdir -p /hive/data/genomes/hg38/bed/gencodeV39/hgcImportPre pushd /hive/data/genomes/hg38/bed/gencodeV39/hgcImportPre (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out& # compare tables from previous release to see if number changed makes # sense. Results are in gencode-cmp.tsv # generate trackDb and joiner blurb pushd ~/kent/src/hg/makeDb/trackDb - ../outside/gencode/bin/gencodeGenerateTrackDbs hg38 39 105 'Sept 2021' + ../outside/gencode/bin/gencodeGenerateTrackDbs hg38 39 105 'Oct 2021' # Update 'Release Notes' (for final) # human/hg38/wgEncodeGencodeSuper.html # edit human/hg38/trackDb.gencode.ra to add new .ra file include jkmake DBS=hg38 # edit all.joiner to add ~/tmp/gencodeV39.joiner # verify with: pushd /hive/data/genomes/hg38/bed/gencodeV39/hgcImportPre make -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck # check tracks in browser sandbox # commit all jkmake DBS=hg38 alpha