d99de4326bbf1ad8e9461d8072622dd68597d277
angie
  Thu Sep 30 09:57:14 2021 -0700
Invoke updateCombinedTree.sh with new arg for explicitly setting date.

diff --git src/hg/utils/otto/sarscov2phylo/updatePublic.sh src/hg/utils/otto/sarscov2phylo/updatePublic.sh
index a112660..20b9ed6 100755
--- src/hg/utils/otto/sarscov2phylo/updatePublic.sh
+++ src/hg/utils/otto/sarscov2phylo/updatePublic.sh
@@ -30,23 +30,23 @@
 time $scriptDir/getCogUk.sh >& getCogUk.log
 
 ncbiDir=$ottoDir/ncbi.$today
 mkdir -p $ncbiDir
 cd $ncbiDir
 time $scriptDir/getNcbi.sh >& getNcbi.log
 
 time $scriptDir/updateIdMapping.sh \
     $gisaidDir/{metadata_batch_$today.tsv.gz,sequences_batch_$today.fa.xz}
 
 buildDir=$ottoDir/$today
 mkdir -p $buildDir
 cd $buildDir
 
 prevDate=$(date -d yesterday +%F)
-time $scriptDir/updateCombinedTree.sh $prevDate $problematicSitesVcf >& updateCombinedTree.log
+time $scriptDir/updateCombinedTree.sh $prevDate $today $problematicSitesVcf >& updateCombinedTree.log
 
 echo ""
 cat hgPhyloPlace.description.txt
 cat hgPhyloPlace.plusGisaid.description.txt
 
 # Clean up
 nice xz -f new*fa &