533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/bactigPos.c src/hg/cgilib/bactigPos.c
new file mode 100644
index 0000000..ea08824
--- /dev/null
+++ src/hg/cgilib/bactigPos.c
@@ -0,0 +1,133 @@
+/* bactigPos.c was originally generated by the autoSql program, which also 
+ * generated bactigPos.h and bactigPos.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "bactigPos.h"
+
+
+void bactigPosStaticLoad(char **row, struct bactigPos *ret)
+/* Load a row from bactigPos table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+ret->chrom = row[0];
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = row[3];
+ret->startContig = row[4];
+ret->endContig = row[5];
+}
+
+struct bactigPos *bactigPosLoad(char **row)
+/* Load a bactigPos from row fetched with select * from bactigPos
+ * from database.  Dispose of this with bactigPosFree(). */
+{
+struct bactigPos *ret;
+
+AllocVar(ret);
+ret->chrom = cloneString(row[0]);
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = cloneString(row[3]);
+ret->startContig = cloneString(row[4]);
+ret->endContig = cloneString(row[5]);
+return ret;
+}
+
+struct bactigPos *bactigPosLoadAll(char *fileName) 
+/* Load all bactigPos from a tab-separated file.
+ * Dispose of this with bactigPosFreeList(). */
+{
+struct bactigPos *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[6];
+
+while (lineFileRow(lf, row))
+    {
+    el = bactigPosLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct bactigPos *bactigPosCommaIn(char **pS, struct bactigPos *ret)
+/* Create a bactigPos out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new bactigPos */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlUnsignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->startContig = sqlStringComma(&s);
+ret->endContig = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void bactigPosFree(struct bactigPos **pEl)
+/* Free a single dynamically allocated bactigPos such as created
+ * with bactigPosLoad(). */
+{
+struct bactigPos *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+freeMem(el->startContig);
+freeMem(el->endContig);
+freez(pEl);
+}
+
+void bactigPosFreeList(struct bactigPos **pList)
+/* Free a list of dynamically allocated bactigPos's */
+{
+struct bactigPos *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    bactigPosFree(&el);
+    }
+*pList = NULL;
+}
+
+void bactigPosOutput(struct bactigPos *el, FILE *f, char sep, char lastSep) 
+/* Print out bactigPos.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->startContig);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->endContig);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+