533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/chicken13kInfo.c src/hg/cgilib/chicken13kInfo.c
new file mode 100644
index 0000000..7289dce
--- /dev/null
+++ src/hg/cgilib/chicken13kInfo.c
@@ -0,0 +1,242 @@
+/* chicken13kInfo.c was originally generated by the autoSql program, which also 
+ * generated chicken13kInfo.h and chicken13kInfo.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "chicken13kInfo.h"
+
+
+void chicken13kInfoStaticLoad(char **row, struct chicken13kInfo *ret)
+/* Load a row from chicken13kInfo table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->id = row[0];
+ret->source = row[1];
+strcpy(ret->pcr, row[2]);
+ret->library = row[3];
+ret->clone = row[4];
+ret->gbkAcc = row[5];
+ret->blat = row[6];
+ret->sourceAnnot = row[7];
+ret->tigrTc = row[8];
+ret->tigrTcAnnot = row[9];
+ret->blastAnnot = row[10];
+ret->comment = row[11];
+}
+
+struct chicken13kInfo *chicken13kInfoLoad(char **row)
+/* Load a chicken13kInfo from row fetched with select * from chicken13kInfo
+ * from database.  Dispose of this with chicken13kInfoFree(). */
+{
+struct chicken13kInfo *ret;
+
+AllocVar(ret);
+ret->id = cloneString(row[0]);
+ret->source = cloneString(row[1]);
+strcpy(ret->pcr, row[2]);
+ret->library = cloneString(row[3]);
+ret->clone = cloneString(row[4]);
+ret->gbkAcc = cloneString(row[5]);
+ret->blat = cloneString(row[6]);
+ret->sourceAnnot = cloneString(row[7]);
+ret->tigrTc = cloneString(row[8]);
+ret->tigrTcAnnot = cloneString(row[9]);
+ret->blastAnnot = cloneString(row[10]);
+ret->comment = cloneString(row[11]);
+return ret;
+}
+
+struct chicken13kInfo *chicken13kInfoLoadAll(char *fileName) 
+/* Load all chicken13kInfo from a whitespace-separated file.
+ * Dispose of this with chicken13kInfoFreeList(). */
+{
+struct chicken13kInfo *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[12];
+
+while (lineFileRow(lf, row))
+    {
+    el = chicken13kInfoLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct chicken13kInfo *chicken13kInfoLoadAllByChar(char *fileName, char chopper) 
+/* Load all chicken13kInfo from a chopper separated file.
+ * Dispose of this with chicken13kInfoFreeList(). */
+{
+struct chicken13kInfo *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[12];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = chicken13kInfoLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct chicken13kInfo *chicken13kInfoLoadByQuery(struct sqlConnection *conn, char *query)
+/* Load all chicken13kInfo from table that satisfy the query given.  
+ * Where query is of the form 'select * from example where something=something'
+ * or 'select example.* from example, anotherTable where example.something = 
+ * anotherTable.something'.
+ * Dispose of this with chicken13kInfoFreeList(). */
+{
+struct chicken13kInfo *list = NULL, *el;
+struct sqlResult *sr;
+char **row;
+
+sr = sqlGetResult(conn, query);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+    el = chicken13kInfoLoad(row);
+    slAddHead(&list, el);
+    }
+slReverse(&list);
+sqlFreeResult(&sr);
+return list;
+}
+
+void chicken13kInfoSaveToDb(struct sqlConnection *conn, struct chicken13kInfo *el, char *tableName, int updateSize)
+/* Save chicken13kInfo as a row to the table specified by tableName. 
+ * As blob fields may be arbitrary size updateSize specifies the approx size
+ * of a string that would contain the entire query. Arrays of native types are
+ * converted to comma separated strings and loaded as such, User defined types are
+ * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
+{
+struct dyString *update = newDyString(updateSize);
+sqlDyStringPrintf(update, "insert into %s values ( '%s','%s','%s','%s','%s','%s','%s',%s,'%s',%s,%s,%s)", 
+	tableName,  el->id,  el->source,  el->pcr,  el->library,  el->clone,  el->gbkAcc,  el->blat,  el->sourceAnnot,  el->tigrTc,  el->tigrTcAnnot,  el->blastAnnot,  el->comment);
+sqlUpdate(conn, update->string);
+freeDyString(&update);
+}
+
+
+struct chicken13kInfo *chicken13kInfoCommaIn(char **pS, struct chicken13kInfo *ret)
+/* Create a chicken13kInfo out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new chicken13kInfo */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->id = sqlStringComma(&s);
+ret->source = sqlStringComma(&s);
+sqlFixedStringComma(&s, ret->pcr, sizeof(ret->pcr));
+ret->library = sqlStringComma(&s);
+ret->clone = sqlStringComma(&s);
+ret->gbkAcc = sqlStringComma(&s);
+ret->blat = sqlStringComma(&s);
+ret->sourceAnnot = sqlStringComma(&s);
+ret->tigrTc = sqlStringComma(&s);
+ret->tigrTcAnnot = sqlStringComma(&s);
+ret->blastAnnot = sqlStringComma(&s);
+ret->comment = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void chicken13kInfoFree(struct chicken13kInfo **pEl)
+/* Free a single dynamically allocated chicken13kInfo such as created
+ * with chicken13kInfoLoad(). */
+{
+struct chicken13kInfo *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->id);
+freeMem(el->source);
+freeMem(el->library);
+freeMem(el->clone);
+freeMem(el->gbkAcc);
+freeMem(el->blat);
+freeMem(el->sourceAnnot);
+freeMem(el->tigrTc);
+freeMem(el->tigrTcAnnot);
+freeMem(el->blastAnnot);
+freeMem(el->comment);
+freez(pEl);
+}
+
+void chicken13kInfoFreeList(struct chicken13kInfo **pList)
+/* Free a list of dynamically allocated chicken13kInfo's */
+{
+struct chicken13kInfo *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    chicken13kInfoFree(&el);
+    }
+*pList = NULL;
+}
+
+void chicken13kInfoOutput(struct chicken13kInfo *el, FILE *f, char sep, char lastSep) 
+/* Print out chicken13kInfo.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->id);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->source);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->pcr);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->library);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->clone);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->gbkAcc);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->blat);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->sourceAnnot);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->tigrTc);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->tigrTcAnnot);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->blastAnnot);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->comment);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+