533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/cnpSebat.c src/hg/cgilib/cnpSebat.c
new file mode 100644
index 0000000..1bfe6db
--- /dev/null
+++ src/hg/cgilib/cnpSebat.c
@@ -0,0 +1,183 @@
+/* cnpSebat.c was originally generated by the autoSql program, which also 
+ * generated cnpSebat.h and cnpSebat.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "cnpSebat.h"
+
+
+void cnpSebatStaticLoad(char **row, struct cnpSebat *ret)
+/* Load a row from cnpSebat table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->chrom = row[0];
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = row[3];
+ret->probes = sqlUnsigned(row[4]);
+ret->individuals = sqlUnsigned(row[5]);
+}
+
+struct cnpSebat *cnpSebatLoad(char **row)
+/* Load a cnpSebat from row fetched with select * from cnpSebat
+ * from database.  Dispose of this with cnpSebatFree(). */
+{
+struct cnpSebat *ret;
+
+AllocVar(ret);
+ret->chrom = cloneString(row[0]);
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = cloneString(row[3]);
+ret->probes = sqlUnsigned(row[4]);
+ret->individuals = sqlUnsigned(row[5]);
+return ret;
+}
+
+struct cnpSebat *cnpSebatLoadAll(char *fileName) 
+/* Load all cnpSebat from a whitespace-separated file.
+ * Dispose of this with cnpSebatFreeList(). */
+{
+struct cnpSebat *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[6];
+
+while (lineFileRow(lf, row))
+    {
+    el = cnpSebatLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct cnpSebat *cnpSebatLoadAllByChar(char *fileName, char chopper) 
+/* Load all cnpSebat from a chopper separated file.
+ * Dispose of this with cnpSebatFreeList(). */
+{
+struct cnpSebat *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[6];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = cnpSebatLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct cnpSebat *cnpSebatLoadByQuery(struct sqlConnection *conn, char *query)
+/* Load all cnpSebat from table that satisfy the query given.  
+ * Where query is of the form 'select * from example where something=something'
+ * or 'select example.* from example, anotherTable where example.something = 
+ * anotherTable.something'.
+ * Dispose of this with cnpSebatFreeList(). */
+{
+struct cnpSebat *list = NULL, *el;
+struct sqlResult *sr;
+char **row;
+
+sr = sqlGetResult(conn, query);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+    el = cnpSebatLoad(row);
+    slAddHead(&list, el);
+    }
+slReverse(&list);
+sqlFreeResult(&sr);
+return list;
+}
+
+void cnpSebatSaveToDb(struct sqlConnection *conn, struct cnpSebat *el, char *tableName, int updateSize)
+/* Save cnpSebat as a row to the table specified by tableName. 
+ * As blob fields may be arbitrary size updateSize specifies the approx size
+ * of a string that would contain the entire query. Arrays of native types are
+ * converted to comma separated strings and loaded as such, User defined types are
+ * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
+{
+struct dyString *update = newDyString(updateSize);
+sqlDyStringPrintf(update, "insert into %s values ( '%s',%u,%u,'%s',%u,%u)", 
+	tableName,  el->chrom,  el->chromStart,  el->chromEnd,  el->name,  el->probes,  el->individuals);
+sqlUpdate(conn, update->string);
+freeDyString(&update);
+}
+
+
+struct cnpSebat *cnpSebatCommaIn(char **pS, struct cnpSebat *ret)
+/* Create a cnpSebat out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new cnpSebat */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlUnsignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->probes = sqlUnsignedComma(&s);
+ret->individuals = sqlUnsignedComma(&s);
+*pS = s;
+return ret;
+}
+
+void cnpSebatFree(struct cnpSebat **pEl)
+/* Free a single dynamically allocated cnpSebat such as created
+ * with cnpSebatLoad(). */
+{
+struct cnpSebat *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+freez(pEl);
+}
+
+void cnpSebatFreeList(struct cnpSebat **pList)
+/* Free a list of dynamically allocated cnpSebat's */
+{
+struct cnpSebat *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    cnpSebatFree(&el);
+    }
+*pList = NULL;
+}
+
+void cnpSebatOutput(struct cnpSebat *el, FILE *f, char sep, char lastSep) 
+/* Print out cnpSebat.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->probes);
+fputc(sep,f);
+fprintf(f, "%u", el->individuals);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+