533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/cgilib/cnpSebat.c src/hg/cgilib/cnpSebat.c new file mode 100644 index 0000000..1bfe6db --- /dev/null +++ src/hg/cgilib/cnpSebat.c @@ -0,0 +1,183 @@ +/* cnpSebat.c was originally generated by the autoSql program, which also + * generated cnpSebat.h and cnpSebat.sql. This module links the database and + * the RAM representation of objects. */ + +/* Copyright (C) 2014 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + +#include "common.h" +#include "linefile.h" +#include "dystring.h" +#include "jksql.h" +#include "cnpSebat.h" + + +void cnpSebatStaticLoad(char **row, struct cnpSebat *ret) +/* Load a row from cnpSebat table into ret. The contents of ret will + * be replaced at the next call to this function. */ +{ + +ret->chrom = row[0]; +ret->chromStart = sqlUnsigned(row[1]); +ret->chromEnd = sqlUnsigned(row[2]); +ret->name = row[3]; +ret->probes = sqlUnsigned(row[4]); +ret->individuals = sqlUnsigned(row[5]); +} + +struct cnpSebat *cnpSebatLoad(char **row) +/* Load a cnpSebat from row fetched with select * from cnpSebat + * from database. Dispose of this with cnpSebatFree(). */ +{ +struct cnpSebat *ret; + +AllocVar(ret); +ret->chrom = cloneString(row[0]); +ret->chromStart = sqlUnsigned(row[1]); +ret->chromEnd = sqlUnsigned(row[2]); +ret->name = cloneString(row[3]); +ret->probes = sqlUnsigned(row[4]); +ret->individuals = sqlUnsigned(row[5]); +return ret; +} + +struct cnpSebat *cnpSebatLoadAll(char *fileName) +/* Load all cnpSebat from a whitespace-separated file. + * Dispose of this with cnpSebatFreeList(). */ +{ +struct cnpSebat *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[6]; + +while (lineFileRow(lf, row)) + { + el = cnpSebatLoad(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct cnpSebat *cnpSebatLoadAllByChar(char *fileName, char chopper) +/* Load all cnpSebat from a chopper separated file. + * Dispose of this with cnpSebatFreeList(). */ +{ +struct cnpSebat *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[6]; + +while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) + { + el = cnpSebatLoad(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct cnpSebat *cnpSebatLoadByQuery(struct sqlConnection *conn, char *query) +/* Load all cnpSebat from table that satisfy the query given. + * Where query is of the form 'select * from example where something=something' + * or 'select example.* from example, anotherTable where example.something = + * anotherTable.something'. + * Dispose of this with cnpSebatFreeList(). */ +{ +struct cnpSebat *list = NULL, *el; +struct sqlResult *sr; +char **row; + +sr = sqlGetResult(conn, query); +while ((row = sqlNextRow(sr)) != NULL) + { + el = cnpSebatLoad(row); + slAddHead(&list, el); + } +slReverse(&list); +sqlFreeResult(&sr); +return list; +} + +void cnpSebatSaveToDb(struct sqlConnection *conn, struct cnpSebat *el, char *tableName, int updateSize) +/* Save cnpSebat as a row to the table specified by tableName. + * As blob fields may be arbitrary size updateSize specifies the approx size + * of a string that would contain the entire query. Arrays of native types are + * converted to comma separated strings and loaded as such, User defined types are + * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */ +{ +struct dyString *update = newDyString(updateSize); +sqlDyStringPrintf(update, "insert into %s values ( '%s',%u,%u,'%s',%u,%u)", + tableName, el->chrom, el->chromStart, el->chromEnd, el->name, el->probes, el->individuals); +sqlUpdate(conn, update->string); +freeDyString(&update); +} + + +struct cnpSebat *cnpSebatCommaIn(char **pS, struct cnpSebat *ret) +/* Create a cnpSebat out of a comma separated string. + * This will fill in ret if non-null, otherwise will + * return a new cnpSebat */ +{ +char *s = *pS; + +if (ret == NULL) + AllocVar(ret); +ret->chrom = sqlStringComma(&s); +ret->chromStart = sqlUnsignedComma(&s); +ret->chromEnd = sqlUnsignedComma(&s); +ret->name = sqlStringComma(&s); +ret->probes = sqlUnsignedComma(&s); +ret->individuals = sqlUnsignedComma(&s); +*pS = s; +return ret; +} + +void cnpSebatFree(struct cnpSebat **pEl) +/* Free a single dynamically allocated cnpSebat such as created + * with cnpSebatLoad(). */ +{ +struct cnpSebat *el; + +if ((el = *pEl) == NULL) return; +freeMem(el->chrom); +freeMem(el->name); +freez(pEl); +} + +void cnpSebatFreeList(struct cnpSebat **pList) +/* Free a list of dynamically allocated cnpSebat's */ +{ +struct cnpSebat *el, *next; + +for (el = *pList; el != NULL; el = next) + { + next = el->next; + cnpSebatFree(&el); + } +*pList = NULL; +} + +void cnpSebatOutput(struct cnpSebat *el, FILE *f, char sep, char lastSep) +/* Print out cnpSebat. Separate fields with sep. Follow last field with lastSep. */ +{ +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->chrom); +if (sep == ',') fputc('"',f); +fputc(sep,f); +fprintf(f, "%u", el->chromStart); +fputc(sep,f); +fprintf(f, "%u", el->chromEnd); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->name); +if (sep == ',') fputc('"',f); +fputc(sep,f); +fprintf(f, "%u", el->probes); +fputc(sep,f); +fprintf(f, "%u", el->individuals); +fputc(lastSep,f); +} + +/* -------------------------------- End autoSql Generated Code -------------------------------- */ +