533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/cpgIslandExt.c src/hg/cgilib/cpgIslandExt.c
new file mode 100644
index 0000000..68a4f87
--- /dev/null
+++ src/hg/cgilib/cpgIslandExt.c
@@ -0,0 +1,166 @@
+/* cpgIslandExt.c was originally generated by the autoSql program, which also 
+ * generated cpgIslandExt.h and cpgIslandExt.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "cpgIslandExt.h"
+
+
+void cpgIslandExtStaticLoad(char **row, struct cpgIslandExt *ret)
+/* Load a row from cpgIslandExt table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->chrom = row[0];
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = row[3];
+ret->length = sqlUnsigned(row[4]);
+ret->cpgNum = sqlUnsigned(row[5]);
+ret->gcNum = sqlUnsigned(row[6]);
+ret->perCpg = atof(row[7]);
+ret->perGc = atof(row[8]);
+ret->obsExp = atof(row[9]);
+}
+
+struct cpgIslandExt *cpgIslandExtLoad(char **row)
+/* Load a cpgIslandExt from row fetched with select * from cpgIslandExt
+ * from database.  Dispose of this with cpgIslandExtFree(). */
+{
+struct cpgIslandExt *ret;
+
+AllocVar(ret);
+ret->chrom = cloneString(row[0]);
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = cloneString(row[3]);
+ret->length = sqlUnsigned(row[4]);
+ret->cpgNum = sqlUnsigned(row[5]);
+ret->gcNum = sqlUnsigned(row[6]);
+ret->perCpg = atof(row[7]);
+ret->perGc = atof(row[8]);
+ret->obsExp = atof(row[9]);
+return ret;
+}
+
+struct cpgIslandExt *cpgIslandExtLoadAll(char *fileName) 
+/* Load all cpgIslandExt from a whitespace-separated file.
+ * Dispose of this with cpgIslandExtFreeList(). */
+{
+struct cpgIslandExt *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[10];
+
+while (lineFileRow(lf, row))
+    {
+    el = cpgIslandExtLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct cpgIslandExt *cpgIslandExtLoadAllByChar(char *fileName, char chopper) 
+/* Load all cpgIslandExt from a chopper separated file.
+ * Dispose of this with cpgIslandExtFreeList(). */
+{
+struct cpgIslandExt *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[10];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = cpgIslandExtLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct cpgIslandExt *cpgIslandExtCommaIn(char **pS, struct cpgIslandExt *ret)
+/* Create a cpgIslandExt out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new cpgIslandExt */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlUnsignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->length = sqlUnsignedComma(&s);
+ret->cpgNum = sqlUnsignedComma(&s);
+ret->gcNum = sqlUnsignedComma(&s);
+ret->perCpg = sqlFloatComma(&s);
+ret->perGc = sqlFloatComma(&s);
+ret->obsExp = sqlFloatComma(&s);
+*pS = s;
+return ret;
+}
+
+void cpgIslandExtFree(struct cpgIslandExt **pEl)
+/* Free a single dynamically allocated cpgIslandExt such as created
+ * with cpgIslandExtLoad(). */
+{
+struct cpgIslandExt *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+freez(pEl);
+}
+
+void cpgIslandExtFreeList(struct cpgIslandExt **pList)
+/* Free a list of dynamically allocated cpgIslandExt's */
+{
+struct cpgIslandExt *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    cpgIslandExtFree(&el);
+    }
+*pList = NULL;
+}
+
+void cpgIslandExtOutput(struct cpgIslandExt *el, FILE *f, char sep, char lastSep) 
+/* Print out cpgIslandExt.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->length);
+fputc(sep,f);
+fprintf(f, "%u", el->cpgNum);
+fputc(sep,f);
+fprintf(f, "%u", el->gcNum);
+fputc(sep,f);
+fprintf(f, "%f", el->perCpg);
+fputc(sep,f);
+fprintf(f, "%f", el->perGc);
+fputc(sep,f);
+fprintf(f, "%f", el->obsExp);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+