533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/dgv.c src/hg/cgilib/dgv.c
new file mode 100644
index 0000000..b72b715
--- /dev/null
+++ src/hg/cgilib/dgv.c
@@ -0,0 +1,208 @@
+/* dgv.c was originally generated by the autoSql program, which also 
+ * generated dgv.h and dgv.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "dgv.h"
+
+
+void dgvStaticLoad(char **row, struct dgv *ret)
+/* Load a row from dgv table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->chrom = row[0];
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = row[3];
+ret->score = sqlUnsigned(row[4]);
+safecpy(ret->strand, sizeof(ret->strand), row[5]);
+ret->thickStart = sqlUnsigned(row[6]);
+ret->thickEnd = sqlUnsigned(row[7]);
+ret->itemRgb = sqlUnsigned(row[8]);
+ret->landmark = row[9];
+ret->varType = row[10];
+ret->reference = row[11];
+ret->pubMedId = sqlUnsigned(row[12]);
+ret->method = row[13];
+ret->sample = row[14];
+}
+
+struct dgv *dgvLoad(char **row)
+/* Load a dgv from row fetched with select * from dgv
+ * from database.  Dispose of this with dgvFree(). */
+{
+struct dgv *ret;
+
+AllocVar(ret);
+ret->chrom = cloneString(row[0]);
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = cloneString(row[3]);
+ret->score = sqlUnsigned(row[4]);
+safecpy(ret->strand, sizeof(ret->strand), row[5]);
+ret->thickStart = sqlUnsigned(row[6]);
+ret->thickEnd = sqlUnsigned(row[7]);
+ret->itemRgb = sqlUnsigned(row[8]);
+ret->landmark = cloneString(row[9]);
+ret->varType = cloneString(row[10]);
+ret->reference = cloneString(row[11]);
+ret->pubMedId = sqlUnsigned(row[12]);
+ret->method = cloneString(row[13]);
+ret->sample = cloneString(row[14]);
+return ret;
+}
+
+struct dgv *dgvLoadAll(char *fileName) 
+/* Load all dgv from a whitespace-separated file.
+ * Dispose of this with dgvFreeList(). */
+{
+struct dgv *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[15];
+
+while (lineFileRow(lf, row))
+    {
+    el = dgvLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct dgv *dgvLoadAllByChar(char *fileName, char chopper) 
+/* Load all dgv from a chopper separated file.
+ * Dispose of this with dgvFreeList(). */
+{
+struct dgv *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[15];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = dgvLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct dgv *dgvCommaIn(char **pS, struct dgv *ret)
+/* Create a dgv out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new dgv */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlUnsignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->score = sqlUnsignedComma(&s);
+sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
+ret->thickStart = sqlUnsignedComma(&s);
+ret->thickEnd = sqlUnsignedComma(&s);
+ret->itemRgb = sqlUnsignedComma(&s);
+ret->landmark = sqlStringComma(&s);
+ret->varType = sqlStringComma(&s);
+ret->reference = sqlStringComma(&s);
+ret->pubMedId = sqlUnsignedComma(&s);
+ret->method = sqlStringComma(&s);
+ret->sample = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void dgvFree(struct dgv **pEl)
+/* Free a single dynamically allocated dgv such as created
+ * with dgvLoad(). */
+{
+struct dgv *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+freeMem(el->landmark);
+freeMem(el->varType);
+freeMem(el->reference);
+freeMem(el->method);
+freeMem(el->sample);
+freez(pEl);
+}
+
+void dgvFreeList(struct dgv **pList)
+/* Free a list of dynamically allocated dgv's */
+{
+struct dgv *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    dgvFree(&el);
+    }
+*pList = NULL;
+}
+
+void dgvOutput(struct dgv *el, FILE *f, char sep, char lastSep) 
+/* Print out dgv.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->score);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->strand);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->thickStart);
+fputc(sep,f);
+fprintf(f, "%u", el->thickEnd);
+fputc(sep,f);
+fprintf(f, "%u", el->itemRgb);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->landmark);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->varType);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->reference);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->pubMedId);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->method);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->sample);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+