533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/genomicDups.c src/hg/cgilib/genomicDups.c
new file mode 100644
index 0000000..542058e
--- /dev/null
+++ src/hg/cgilib/genomicDups.c
@@ -0,0 +1,151 @@
+/* genomicDups.c was originally generated by the autoSql program, which also 
+ * generated genomicDups.h and genomicDups.sql.  This module links the database and the RAM 
+ * representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "jksql.h"
+#include "genomicDups.h"
+
+
+void genomicDupsStaticLoad(char **row, struct genomicDups *ret)
+/* Load a row from genomicDups table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->chrom = row[0];
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = row[3];
+ret->score = sqlUnsigned(row[4]);
+strcpy(ret->strand, row[5]);
+ret->otherChrom = row[6];
+ret->otherStart = sqlUnsigned(row[7]);
+ret->otherEnd = sqlUnsigned(row[8]);
+ret->alignB = sqlUnsigned(row[9]);
+ret->matchB = sqlUnsigned(row[10]);
+ret->mismatchB = sqlUnsigned(row[11]);
+ret->fracMatch = atof(row[12]);
+ret->jcK = atof(row[13]);
+}
+
+struct genomicDups *genomicDupsLoad(char **row)
+/* Load a genomicDups from row fetched with select * from genomicDups
+ * from database.  Dispose of this with genomicDupsFree(). */
+{
+struct genomicDups *ret;
+
+AllocVar(ret);
+ret->chrom = cloneString(row[0]);
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = cloneString(row[3]);
+ret->score = sqlUnsigned(row[4]);
+strcpy(ret->strand, row[5]);
+ret->otherChrom = cloneString(row[6]);
+ret->otherStart = sqlUnsigned(row[7]);
+ret->otherEnd = sqlUnsigned(row[8]);
+ret->alignB = sqlUnsigned(row[9]);
+ret->matchB = sqlUnsigned(row[10]);
+ret->mismatchB = sqlUnsigned(row[11]);
+ret->fracMatch = atof(row[12]);
+ret->jcK = atof(row[13]);
+return ret;
+}
+
+struct genomicDups *genomicDupsCommaIn(char **pS, struct genomicDups *ret)
+/* Create a genomicDups out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new genomicDups */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlUnsignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->score = sqlUnsignedComma(&s);
+sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
+ret->otherChrom = sqlStringComma(&s);
+ret->otherStart = sqlUnsignedComma(&s);
+ret->otherEnd = sqlUnsignedComma(&s);
+ret->alignB = sqlUnsignedComma(&s);
+ret->matchB = sqlUnsignedComma(&s);
+ret->mismatchB = sqlUnsignedComma(&s);
+ret->fracMatch = sqlSignedComma(&s);
+ret->jcK = sqlSignedComma(&s);
+*pS = s;
+return ret;
+}
+
+void genomicDupsFree(struct genomicDups **pEl)
+/* Free a single dynamically allocated genomicDups such as created
+ * with genomicDupsLoad(). */
+{
+struct genomicDups *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+freeMem(el->otherChrom);
+freez(pEl);
+}
+
+void genomicDupsFreeList(struct genomicDups **pList)
+/* Free a list of dynamically allocated genomicDups's */
+{
+struct genomicDups *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    genomicDupsFree(&el);
+    }
+*pList = NULL;
+}
+
+void genomicDupsOutput(struct genomicDups *el, FILE *f, char sep, char lastSep) 
+/* Print out genomicDups.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->score);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->strand);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->otherChrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->otherStart);
+fputc(sep,f);
+fprintf(f, "%u", el->otherEnd);
+fputc(sep,f);
+fprintf(f, "%u", el->alignB);
+fputc(sep,f);
+fprintf(f, "%u", el->matchB);
+fputc(sep,f);
+fprintf(f, "%u", el->mismatchB);
+fputc(sep,f);
+fprintf(f, "%f", el->fracMatch);
+fputc(sep,f);
+fprintf(f, "%f", el->jcK);
+fputc(lastSep,f);
+}
+