533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/gv.c src/hg/cgilib/gv.c
new file mode 100644
index 0000000..dff6b74
--- /dev/null
+++ src/hg/cgilib/gv.c
@@ -0,0 +1,1008 @@
+/* gv.c was originally generated by the autoSql program, which also 
+ * generated gv.h and gv.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "gv.h"
+
+
+void gvStaticLoad(char **row, struct gv *ret)
+/* Load a row from gv table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->id = row[0];
+ret->name = row[1];
+ret->srcId = row[2];
+ret->baseChangeType = row[3];
+ret->location = row[4];
+ret->coordinateAccuracy = sqlUnsigned(row[5]);
+}
+
+struct gv *gvLoad(char **row)
+/* Load a gv from row fetched with select * from gv
+ * from database.  Dispose of this with gvFree(). */
+{
+struct gv *ret;
+
+AllocVar(ret);
+ret->id = cloneString(row[0]);
+ret->name = cloneString(row[1]);
+ret->srcId = cloneString(row[2]);
+ret->baseChangeType = cloneString(row[3]);
+ret->location = cloneString(row[4]);
+ret->coordinateAccuracy = sqlUnsigned(row[5]);
+return ret;
+}
+
+struct gv *gvLoadAll(char *fileName) 
+/* Load all gv from a whitespace-separated file.
+ * Dispose of this with gvFreeList(). */
+{
+struct gv *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[6];
+
+while (lineFileRow(lf, row))
+    {
+    el = gvLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct gv *gvLoadAllByChar(char *fileName, char chopper) 
+/* Load all gv from a chopper separated file.
+ * Dispose of this with gvFreeList(). */
+{
+struct gv *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[6];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = gvLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct gv *gvLoadByQuery(struct sqlConnection *conn, char *query)
+/* Load all gv from table that satisfy the query given.  
+ * Where query is of the form 'select * from example where something=something'
+ * or 'select example.* from example, anotherTable where example.something = 
+ * anotherTable.something'.
+ * Dispose of this with gvFreeList(). */
+{
+struct gv *list = NULL, *el;
+struct sqlResult *sr;
+char **row;
+
+sr = sqlGetResult(conn, query);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+    el = gvLoad(row);
+    slAddHead(&list, el);
+    }
+slReverse(&list);
+sqlFreeResult(&sr);
+return list;
+}
+
+void gvSaveToDb(struct sqlConnection *conn, struct gv *el, char *tableName, int updateSize)
+/* Save gv as a row to the table specified by tableName. 
+ * As blob fields may be arbitrary size updateSize specifies the approx size
+ * of a string that would contain the entire query. Arrays of native types are
+ * converted to comma separated strings and loaded as such, User defined types are
+ * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
+{
+struct dyString *update = newDyString(updateSize);
+sqlDyStringPrintf(update, "insert into %s values ( '%s','%s','%s','%s','%s',%u)", 
+	tableName,  el->id,  el->name,  el->srcId,  el->baseChangeType,  el->location,  el->coordinateAccuracy);
+sqlUpdate(conn, update->string);
+freeDyString(&update);
+}
+
+
+struct gv *gvCommaIn(char **pS, struct gv *ret)
+/* Create a gv out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gv */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->id = sqlStringComma(&s);
+ret->name = sqlStringComma(&s);
+ret->srcId = sqlStringComma(&s);
+ret->baseChangeType = sqlStringComma(&s);
+ret->location = sqlStringComma(&s);
+ret->coordinateAccuracy = sqlUnsignedComma(&s);
+*pS = s;
+return ret;
+}
+
+void gvFree(struct gv **pEl)
+/* Free a single dynamically allocated gv such as created
+ * with gvLoad(). */
+{
+struct gv *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->id);
+freeMem(el->name);
+freeMem(el->srcId);
+freeMem(el->baseChangeType);
+freeMem(el->location);
+freez(pEl);
+}
+
+void gvFreeList(struct gv **pList)
+/* Free a list of dynamically allocated gv's */
+{
+struct gv *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    gvFree(&el);
+    }
+*pList = NULL;
+}
+
+void gvOutput(struct gv *el, FILE *f, char sep, char lastSep) 
+/* Print out gv.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->id);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->srcId);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->baseChangeType);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->location);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->coordinateAccuracy);
+fputc(lastSep,f);
+}
+
+void gvPosStaticLoad(char **row, struct gvPos *ret)
+/* Load a row from gvPos table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->bin = sqlUnsigned(row[0]);
+ret->chrom = row[1];
+ret->chromStart = sqlUnsigned(row[2]);
+ret->chromEnd = sqlUnsigned(row[3]);
+ret->name = row[4];
+ret->id = NULL;
+strcpy(ret->strand, row[5]);
+ret->label = row[6];
+}
+
+struct gvPos *gvPosLoad(char **row)
+/* Load a gvPos from row fetched with select * from gvPos
+ * from database.  Dispose of this with gvPosFree(). */
+{
+struct gvPos *ret;
+
+AllocVar(ret);
+ret->bin = sqlUnsigned(row[0]);
+ret->chrom = cloneString(row[1]);
+ret->chromStart = sqlUnsigned(row[2]);
+ret->chromEnd = sqlUnsigned(row[3]);
+ret->name = cloneString(row[4]);
+ret->id = NULL;
+strcpy(ret->strand, row[5]);
+ret->label = cloneString(row[6]);
+return ret;
+}
+
+struct gvPos *gvPosLoadAll(char *fileName) 
+/* Load all gvPos from a whitespace-separated file.
+ * Dispose of this with gvPosFreeList(). */
+{
+struct gvPos *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[7];
+
+while (lineFileRow(lf, row))
+    {
+    el = gvPosLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct gvPos *gvPosLoadAllByChar(char *fileName, char chopper) 
+/* Load all gvPos from a chopper separated file.
+ * Dispose of this with gvPosFreeList(). */
+{
+struct gvPos *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[7];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = gvPosLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct gvPos *gvPosLoadByQuery(struct sqlConnection *conn, char *query)
+/* Load all gvPos from table that satisfy the query given.  
+ * Where query is of the form 'select * from example where something=something'
+ * or 'select example.* from example, anotherTable where example.something = 
+ * anotherTable.something'.
+ * Dispose of this with gvPosFreeList(). */
+{
+struct gvPos *list = NULL, *el;
+struct sqlResult *sr;
+char **row;
+
+sr = sqlGetResult(conn, query);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+    el = gvPosLoad(row);
+    slAddHead(&list, el);
+    }
+slReverse(&list);
+sqlFreeResult(&sr);
+return list;
+}
+
+void gvPosSaveToDb(struct sqlConnection *conn, struct gvPos *el, char *tableName, int updateSize)
+/* Save gvPos as a row to the table specified by tableName. 
+ * As blob fields may be arbitrary size updateSize specifies the approx size
+ * of a string that would contain the entire query. Arrays of native types are
+ * converted to comma separated strings and loaded as such, User defined types are
+ * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
+{
+struct dyString *update = newDyString(updateSize);
+sqlDyStringPrintf(update, "insert into %s values ( %u,'%s',%u,%u,'%s','%s','%s')", 
+	tableName,  el->bin,  el->chrom,  el->chromStart,  el->chromEnd,  el->name,  el->strand,  el->label);
+sqlUpdate(conn, update->string);
+freeDyString(&update);
+}
+
+
+struct gvPos *gvPosCommaIn(char **pS, struct gvPos *ret)
+/* Create a gvPos out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gvPos */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->bin = sqlUnsignedComma(&s);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlUnsignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
+ret->label = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void gvPosFree(struct gvPos **pEl)
+/* Free a single dynamically allocated gvPos such as created
+ * with gvPosLoad(). */
+{
+struct gvPos *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+freeMem(el->label);
+freeMem(el->id);
+freez(pEl);
+}
+
+void gvPosFreeList(struct gvPos **pList)
+/* Free a list of dynamically allocated gvPos's */
+{
+struct gvPos *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    gvPosFree(&el);
+    }
+*pList = NULL;
+}
+
+void gvPosOutput(struct gvPos *el, FILE *f, char sep, char lastSep) 
+/* Print out gvPos.  Separate fields with sep. Follow last field with lastSep. */
+{
+fprintf(f, "%u", el->bin);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->strand);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->label);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+void gvSrcStaticLoad(char **row, struct gvSrc *ret)
+/* Load a row from gvSrc table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->srcId = row[0];
+ret->src = row[1];
+ret->lsdb = row[2];
+}
+
+struct gvSrc *gvSrcLoad(char **row)
+/* Load a gvSrc from row fetched with select * from gvSrc
+ * from database.  Dispose of this with gvSrcFree(). */
+{
+struct gvSrc *ret;
+
+AllocVar(ret);
+ret->srcId = cloneString(row[0]);
+ret->src = cloneString(row[1]);
+ret->lsdb = cloneString(row[2]);
+return ret;
+}
+
+struct gvSrc *gvSrcLoadAll(char *fileName) 
+/* Load all gvSrc from a whitespace-separated file.
+ * Dispose of this with gvSrcFreeList(). */
+{
+struct gvSrc *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[3];
+
+while (lineFileRow(lf, row))
+    {
+    el = gvSrcLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct gvSrc *gvSrcLoadAllByChar(char *fileName, char chopper) 
+/* Load all gvSrc from a chopper separated file.
+ * Dispose of this with gvSrcFreeList(). */
+{
+struct gvSrc *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[3];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = gvSrcLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct gvSrc *gvSrcLoadByQuery(struct sqlConnection *conn, char *query)
+/* Load all gvSrc from table that satisfy the query given.  
+ * Where query is of the form 'select * from example where something=something'
+ * or 'select example.* from example, anotherTable where example.something = 
+ * anotherTable.something'.
+ * Dispose of this with gvSrcFreeList(). */
+{
+struct gvSrc *list = NULL, *el;
+struct sqlResult *sr;
+char **row;
+
+sr = sqlGetResult(conn, query);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+    el = gvSrcLoad(row);
+    slAddHead(&list, el);
+    }
+slReverse(&list);
+sqlFreeResult(&sr);
+return list;
+}
+
+void gvSrcSaveToDb(struct sqlConnection *conn, struct gvSrc *el, char *tableName, int updateSize)
+/* Save gvSrc as a row to the table specified by tableName. 
+ * As blob fields may be arbitrary size updateSize specifies the approx size
+ * of a string that would contain the entire query. Arrays of native types are
+ * converted to comma separated strings and loaded as such, User defined types are
+ * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
+{
+struct dyString *update = newDyString(updateSize);
+sqlDyStringPrintf(update, "insert into %s values ( '%s','%s','%s')", 
+	tableName,  el->srcId,  el->src,  el->lsdb);
+sqlUpdate(conn, update->string);
+freeDyString(&update);
+}
+
+
+struct gvSrc *gvSrcCommaIn(char **pS, struct gvSrc *ret)
+/* Create a gvSrc out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gvSrc */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->srcId = sqlStringComma(&s);
+ret->src = sqlStringComma(&s);
+ret->lsdb = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void gvSrcFree(struct gvSrc **pEl)
+/* Free a single dynamically allocated gvSrc such as created
+ * with gvSrcLoad(). */
+{
+struct gvSrc *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->srcId);
+freeMem(el->src);
+freeMem(el->lsdb);
+freez(pEl);
+}
+
+void gvSrcFreeList(struct gvSrc **pList)
+/* Free a list of dynamically allocated gvSrc's */
+{
+struct gvSrc *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    gvSrcFree(&el);
+    }
+*pList = NULL;
+}
+
+void gvSrcOutput(struct gvSrc *el, FILE *f, char sep, char lastSep) 
+/* Print out gvSrc.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->srcId);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->src);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->lsdb);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+void gvAttrStaticLoad(char **row, struct gvAttr *ret)
+/* Load a row from gvAttr table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->id = row[0];
+ret->attrType = row[1];
+ret->attrVal = row[2];
+}
+
+struct gvAttr *gvAttrLoad(char **row)
+/* Load a gvAttr from row fetched with select * from gvAttr
+ * from database.  Dispose of this with gvAttrFree(). */
+{
+struct gvAttr *ret;
+
+AllocVar(ret);
+ret->id = cloneString(row[0]);
+ret->attrType = cloneString(row[1]);
+ret->attrVal = cloneString(row[2]);
+return ret;
+}
+
+struct gvAttr *gvAttrLoadAll(char *fileName) 
+/* Load all gvAttr from a whitespace-separated file.
+ * Dispose of this with gvAttrFreeList(). */
+{
+struct gvAttr *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[3];
+
+while (lineFileRow(lf, row))
+    {
+    el = gvAttrLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct gvAttr *gvAttrLoadAllByChar(char *fileName, char chopper) 
+/* Load all gvAttr from a chopper separated file.
+ * Dispose of this with gvAttrFreeList(). */
+{
+struct gvAttr *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[3];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = gvAttrLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct gvAttr *gvAttrLoadByQuery(struct sqlConnection *conn, char *query)
+/* Load all gvAttr from table that satisfy the query given.  
+ * Where query is of the form 'select * from example where something=something'
+ * or 'select example.* from example, anotherTable where example.something = 
+ * anotherTable.something'.
+ * Dispose of this with gvAttrFreeList(). */
+{
+struct gvAttr *list = NULL, *el;
+struct sqlResult *sr;
+char **row;
+
+sr = sqlGetResult(conn, query);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+    el = gvAttrLoad(row);
+    slAddHead(&list, el);
+    }
+slReverse(&list);
+sqlFreeResult(&sr);
+return list;
+}
+
+void gvAttrSaveToDb(struct sqlConnection *conn, struct gvAttr *el, char *tableName, int updateSize)
+/* Save gvAttr as a row to the table specified by tableName. 
+ * As blob fields may be arbitrary size updateSize specifies the approx size
+ * of a string that would contain the entire query. Arrays of native types are
+ * converted to comma separated strings and loaded as such, User defined types are
+ * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
+{
+struct dyString *update = newDyString(updateSize);
+sqlDyStringPrintf(update, "insert into %s values ( '%s','%s','%s')", 
+	tableName,  el->id,  el->attrType,  el->attrVal);
+sqlUpdate(conn, update->string);
+freeDyString(&update);
+}
+
+
+struct gvAttr *gvAttrCommaIn(char **pS, struct gvAttr *ret)
+/* Create a gvAttr out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gvAttr */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->id = sqlStringComma(&s);
+ret->attrType = sqlStringComma(&s);
+ret->attrVal = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void gvAttrFree(struct gvAttr **pEl)
+/* Free a single dynamically allocated gvAttr such as created
+ * with gvAttrLoad(). */
+{
+struct gvAttr *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->id);
+freeMem(el->attrType);
+freeMem(el->attrVal);
+freez(pEl);
+}
+
+void gvAttrFreeList(struct gvAttr **pList)
+/* Free a list of dynamically allocated gvAttr's */
+{
+struct gvAttr *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    gvAttrFree(&el);
+    }
+*pList = NULL;
+}
+
+void gvAttrOutput(struct gvAttr *el, FILE *f, char sep, char lastSep) 
+/* Print out gvAttr.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->id);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->attrType);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->attrVal);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+void gvLinkStaticLoad(char **row, struct gvLink *ret)
+/* Load a row from gvLink table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->id = row[0];
+ret->attrType = row[1];
+ret->raKey = row[2];
+ret->acc = row[3];
+ret->displayVal = row[4];
+}
+
+struct gvLink *gvLinkLoad(char **row)
+/* Load a gvLink from row fetched with select * from gvLink
+ * from database.  Dispose of this with gvLinkFree(). */
+{
+struct gvLink *ret;
+
+AllocVar(ret);
+ret->id = cloneString(row[0]);
+ret->attrType = cloneString(row[1]);
+ret->raKey = cloneString(row[2]);
+ret->acc = cloneString(row[3]);
+ret->displayVal = cloneString(row[4]);
+return ret;
+}
+
+struct gvLink *gvLinkLoadAll(char *fileName) 
+/* Load all gvLink from a whitespace-separated file.
+ * Dispose of this with gvLinkFreeList(). */
+{
+struct gvLink *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[5];
+
+while (lineFileRow(lf, row))
+    {
+    el = gvLinkLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct gvLink *gvLinkLoadAllByChar(char *fileName, char chopper) 
+/* Load all gvLink from a chopper separated file.
+ * Dispose of this with gvLinkFreeList(). */
+{
+struct gvLink *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[5];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = gvLinkLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct gvLink *gvLinkLoadByQuery(struct sqlConnection *conn, char *query)
+/* Load all gvLink from table that satisfy the query given.  
+ * Where query is of the form 'select * from example where something=something'
+ * or 'select example.* from example, anotherTable where example.something = 
+ * anotherTable.something'.
+ * Dispose of this with gvLinkFreeList(). */
+{
+struct gvLink *list = NULL, *el;
+struct sqlResult *sr;
+char **row;
+
+sr = sqlGetResult(conn, query);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+    el = gvLinkLoad(row);
+    slAddHead(&list, el);
+    }
+slReverse(&list);
+sqlFreeResult(&sr);
+return list;
+}
+
+void gvLinkSaveToDb(struct sqlConnection *conn, struct gvLink *el, char *tableName, int updateSize)
+/* Save gvLink as a row to the table specified by tableName. 
+ * As blob fields may be arbitrary size updateSize specifies the approx size
+ * of a string that would contain the entire query. Arrays of native types are
+ * converted to comma separated strings and loaded as such, User defined types are
+ * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
+{
+struct dyString *update = newDyString(updateSize);
+sqlDyStringPrintf(update, "insert into %s values ( '%s','%s','%s','%s','%s')", 
+	tableName,  el->id,  el->attrType,  el->raKey,  el->acc,  el->displayVal);
+sqlUpdate(conn, update->string);
+freeDyString(&update);
+}
+
+
+struct gvLink *gvLinkCommaIn(char **pS, struct gvLink *ret)
+/* Create a gvLink out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gvLink */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->id = sqlStringComma(&s);
+ret->attrType = sqlStringComma(&s);
+ret->raKey = sqlStringComma(&s);
+ret->acc = sqlStringComma(&s);
+ret->displayVal = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void gvLinkFree(struct gvLink **pEl)
+/* Free a single dynamically allocated gvLink such as created
+ * with gvLinkLoad(). */
+{
+struct gvLink *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->id);
+freeMem(el->attrType);
+freeMem(el->raKey);
+freeMem(el->acc);
+freeMem(el->displayVal);
+freez(pEl);
+}
+
+void gvLinkFreeList(struct gvLink **pList)
+/* Free a list of dynamically allocated gvLink's */
+{
+struct gvLink *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    gvLinkFree(&el);
+    }
+*pList = NULL;
+}
+
+void gvLinkOutput(struct gvLink *el, FILE *f, char sep, char lastSep) 
+/* Print out gvLink.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->id);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->attrType);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->raKey);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->acc);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->displayVal);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+void gvAttrLongStaticLoad(char **row, struct gvAttrLong *ret)
+/* Load a row from gvAttrLong table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->id = row[0];
+ret->attrType = row[1];
+ret->attrVal = row[2];
+}
+
+struct gvAttrLong *gvAttrLongLoad(char **row)
+/* Load a gvAttrLong from row fetched with select * from gvAttrLong
+ * from database.  Dispose of this with gvAttrLongFree(). */
+{
+struct gvAttrLong *ret;
+
+AllocVar(ret);
+ret->id = cloneString(row[0]);
+ret->attrType = cloneString(row[1]);
+ret->attrVal = cloneString(row[2]);
+return ret;
+}
+
+struct gvAttrLong *gvAttrLongLoadAll(char *fileName) 
+/* Load all gvAttrLong from a whitespace-separated file.
+ * Dispose of this with gvAttrLongFreeList(). */
+{
+struct gvAttrLong *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[3];
+
+while (lineFileRow(lf, row))
+    {
+    el = gvAttrLongLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct gvAttrLong *gvAttrLongLoadAllByChar(char *fileName, char chopper) 
+/* Load all gvAttrLong from a chopper separated file.
+ * Dispose of this with gvAttrLongFreeList(). */
+{
+struct gvAttrLong *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[3];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = gvAttrLongLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct gvAttrLong *gvAttrLongLoadByQuery(struct sqlConnection *conn, char *query)
+/* Load all gvAttrLong from table that satisfy the query given.  
+ * Where query is of the form 'select * from example where something=something'
+ * or 'select example.* from example, anotherTable where example.something = 
+ * anotherTable.something'.
+ * Dispose of this with gvAttrLongFreeList(). */
+{
+struct gvAttrLong *list = NULL, *el;
+struct sqlResult *sr;
+char **row;
+
+sr = sqlGetResult(conn, query);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+    el = gvAttrLongLoad(row);
+    slAddHead(&list, el);
+    }
+slReverse(&list);
+sqlFreeResult(&sr);
+return list;
+}
+
+void gvAttrLongSaveToDb(struct sqlConnection *conn, struct gvAttrLong *el, char *tableName, int updateSize)
+/* Save gvAttrLong as a row to the table specified by tableName. 
+ * As blob fields may be arbitrary size updateSize specifies the approx size
+ * of a string that would contain the entire query. Arrays of native types are
+ * converted to comma separated strings and loaded as such, User defined types are
+ * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
+{
+struct dyString *update = newDyString(updateSize);
+sqlDyStringPrintf(update, "insert into %s values ( '%s','%s',%s)", 
+	tableName,  el->id,  el->attrType,  el->attrVal);
+sqlUpdate(conn, update->string);
+freeDyString(&update);
+}
+
+
+struct gvAttrLong *gvAttrLongCommaIn(char **pS, struct gvAttrLong *ret)
+/* Create a gvAttrLong out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gvAttrLong */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->id = sqlStringComma(&s);
+ret->attrType = sqlStringComma(&s);
+ret->attrVal = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void gvAttrLongFree(struct gvAttrLong **pEl)
+/* Free a single dynamically allocated gvAttrLong such as created
+ * with gvAttrLongLoad(). */
+{
+struct gvAttrLong *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->id);
+freeMem(el->attrType);
+freeMem(el->attrVal);
+freez(pEl);
+}
+
+void gvAttrLongFreeList(struct gvAttrLong **pList)
+/* Free a list of dynamically allocated gvAttrLong's */
+{
+struct gvAttrLong *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    gvAttrLongFree(&el);
+    }
+*pList = NULL;
+}
+
+void gvAttrLongOutput(struct gvAttrLong *el, FILE *f, char sep, char lastSep) 
+/* Print out gvAttrLong.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->id);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->attrType);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->attrVal);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+