533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/jaxOrtholog.c src/hg/cgilib/jaxOrtholog.c
new file mode 100644
index 0000000..2c5dc89
--- /dev/null
+++ src/hg/cgilib/jaxOrtholog.c
@@ -0,0 +1,171 @@
+/* jaxOrtholog.c was originally generated by the autoSql program, which also 
+ * generated jaxOrtholog.h and jaxOrtholog.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "jaxOrtholog.h"
+
+
+void jaxOrthologStaticLoad(char **row, struct jaxOrtholog *ret)
+/* Load a row from jaxOrtholog table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->humanSymbol = row[0];
+ret->humanBand = row[1];
+ret->mgiId = row[2];
+ret->mouseSymbol = row[3];
+ret->mouseChr = row[4];
+ret->mouseCm = row[5];
+ret->mouseBand = row[6];
+}
+
+struct jaxOrtholog *jaxOrthologLoad(char **row)
+/* Load a jaxOrtholog from row fetched with select * from jaxOrtholog
+ * from database.  Dispose of this with jaxOrthologFree(). */
+{
+struct jaxOrtholog *ret;
+
+AllocVar(ret);
+ret->humanSymbol = cloneString(row[0]);
+ret->humanBand = cloneString(row[1]);
+ret->mgiId = cloneString(row[2]);
+ret->mouseSymbol = cloneString(row[3]);
+ret->mouseChr = cloneString(row[4]);
+ret->mouseCm = cloneString(row[5]);
+ret->mouseBand = cloneString(row[6]);
+return ret;
+}
+
+struct jaxOrtholog *jaxOrthologLoadAll(char *fileName) 
+/* Load all jaxOrtholog from a tab-separated file.
+ * Dispose of this with jaxOrthologFreeList(). */
+{
+struct jaxOrtholog *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[7];
+
+while (lineFileRow(lf, row))
+    {
+    el = jaxOrthologLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct jaxOrtholog *jaxOrthologLoadWhere(struct sqlConnection *conn, char *table, char *where)
+/* Load all jaxOrtholog from table that satisfy where clause. The
+ * where clause may be NULL in which case whole table is loaded
+ * Dispose of this with jaxOrthologFreeList(). */
+{
+struct jaxOrtholog *list = NULL, *el;
+struct dyString *query = dyStringNew(256);
+struct sqlResult *sr;
+char **row;
+
+sqlDyStringPrintf(query, "select * from %s", table);
+if (where != NULL)
+    dyStringPrintf(query, " where %s", where);
+sr = sqlGetResult(conn, query->string);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+    el = jaxOrthologLoad(row);
+    slAddHead(&list, el);
+    }
+slReverse(&list);
+sqlFreeResult(&sr);
+dyStringFree(&query);
+return list;
+}
+
+struct jaxOrtholog *jaxOrthologCommaIn(char **pS, struct jaxOrtholog *ret)
+/* Create a jaxOrtholog out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new jaxOrtholog */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->humanSymbol = sqlStringComma(&s);
+ret->humanBand = sqlStringComma(&s);
+ret->mgiId = sqlStringComma(&s);
+ret->mouseSymbol = sqlStringComma(&s);
+ret->mouseChr = sqlStringComma(&s);
+ret->mouseCm = sqlStringComma(&s);
+ret->mouseBand = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void jaxOrthologFree(struct jaxOrtholog **pEl)
+/* Free a single dynamically allocated jaxOrtholog such as created
+ * with jaxOrthologLoad(). */
+{
+struct jaxOrtholog *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->humanSymbol);
+freeMem(el->humanBand);
+freeMem(el->mgiId);
+freeMem(el->mouseSymbol);
+freeMem(el->mouseChr);
+freeMem(el->mouseCm);
+freeMem(el->mouseBand);
+freez(pEl);
+}
+
+void jaxOrthologFreeList(struct jaxOrtholog **pList)
+/* Free a list of dynamically allocated jaxOrtholog's */
+{
+struct jaxOrtholog *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    jaxOrthologFree(&el);
+    }
+*pList = NULL;
+}
+
+void jaxOrthologOutput(struct jaxOrtholog *el, FILE *f, char sep, char lastSep) 
+/* Print out jaxOrtholog.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->humanSymbol);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->humanBand);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->mgiId);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->mouseSymbol);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->mouseChr);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->mouseCm);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->mouseBand);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+