533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/ld2.c src/hg/cgilib/ld2.c
new file mode 100644
index 0000000..3834262
--- /dev/null
+++ src/hg/cgilib/ld2.c
@@ -0,0 +1,193 @@
+/* ld2.c was originally generated by the autoSql program, which also 
+ * generated ld2.h and ld2.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "ld2.h"
+
+
+void ld2StaticLoad(char **row, struct ld2 *ret)
+/* Load a row from ld2 table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->chrom = row[0];
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = row[3];
+ret->ldCount = sqlUnsigned(row[4]);
+ret->dprime = row[5];
+ret->rsquared = row[6];
+ret->lod = row[7];
+ret->avgDprime = row[8][0];
+ret->avgRsquared = row[9][0];
+ret->avgLod = row[10][0];
+ret->tInt = row[11][0];
+}
+
+struct ld2 *ld2Load(char **row)
+/* Load a ld2 from row fetched with select * from ld2
+ * from database.  Dispose of this with ld2Free(). */
+{
+struct ld2 *ret;
+
+AllocVar(ret);
+ret->chrom = cloneString(row[0]);
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = cloneString(row[3]);
+ret->ldCount = sqlUnsigned(row[4]);
+ret->dprime = cloneString(row[5]);
+ret->rsquared = cloneString(row[6]);
+ret->lod = cloneString(row[7]);
+ret->avgDprime = row[8][0];
+ret->avgRsquared = row[9][0];
+ret->avgLod = row[10][0];
+ret->tInt = row[11][0];
+return ret;
+}
+
+struct ld2 *ld2LoadAll(char *fileName) 
+/* Load all ld2 from a whitespace-separated file.
+ * Dispose of this with ld2FreeList(). */
+{
+struct ld2 *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[12];
+
+while (lineFileRow(lf, row))
+    {
+    el = ld2Load(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct ld2 *ld2LoadAllByChar(char *fileName, char chopper) 
+/* Load all ld2 from a chopper separated file.
+ * Dispose of this with ld2FreeList(). */
+{
+struct ld2 *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[12];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = ld2Load(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct ld2 *ld2CommaIn(char **pS, struct ld2 *ret)
+/* Create a ld2 out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new ld2 */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlUnsignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->ldCount = sqlUnsignedComma(&s);
+ret->dprime = sqlStringComma(&s);
+ret->rsquared = sqlStringComma(&s);
+ret->lod = sqlStringComma(&s);
+sqlFixedStringComma(&s, &(ret->avgDprime), sizeof(ret->avgDprime));
+sqlFixedStringComma(&s, &(ret->avgRsquared), sizeof(ret->avgRsquared));
+sqlFixedStringComma(&s, &(ret->avgLod), sizeof(ret->avgLod));
+sqlFixedStringComma(&s, &(ret->tInt), sizeof(ret->tInt));
+*pS = s;
+return ret;
+}
+
+void ld2Free(struct ld2 **pEl)
+/* Free a single dynamically allocated ld2 such as created
+ * with ld2Load(). */
+{
+struct ld2 *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+freeMem(el->dprime);
+freeMem(el->rsquared);
+freeMem(el->lod);
+freez(pEl);
+}
+
+void ld2FreeList(struct ld2 **pList)
+/* Free a list of dynamically allocated ld2's */
+{
+struct ld2 *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    ld2Free(&el);
+    }
+*pList = NULL;
+}
+
+void ld2Output(struct ld2 *el, FILE *f, char sep, char lastSep) 
+/* Print out ld2.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->ldCount);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->dprime);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->rsquared);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->lod);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%c", el->avgDprime);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%c", el->avgRsquared);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%c", el->avgLod);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%c", el->tInt);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+