533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/mouseOrtho.c src/hg/cgilib/mouseOrtho.c
new file mode 100644
index 0000000..50a86ee
--- /dev/null
+++ src/hg/cgilib/mouseOrtho.c
@@ -0,0 +1,164 @@
+/* mouseOrtho.c was originally generated by the autoSql program, which also 
+ * generated mouseOrtho.h and mouseOrtho.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "mouseOrtho.h"
+
+
+void mouseOrthoStaticLoad(char **row, struct mouseOrtho *ret)
+/* Load a row from mouseOrtho table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->chrom = row[0];
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = row[3];
+ret->score = sqlUnsigned(row[4]);
+ret->strand = row[5];
+ret->thickStart = sqlUnsigned(row[6]);
+ret->thickEnd = sqlUnsigned(row[7]);
+}
+
+struct mouseOrtho *mouseOrthoLoad(char **row)
+/* Load a mouseOrtho from row fetched with select * from mouseOrtho
+ * from database.  Dispose of this with mouseOrthoFree(). */
+{
+struct mouseOrtho *ret;
+
+AllocVar(ret);
+ret->chrom = cloneString(row[0]);
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = cloneString(row[3]);
+ret->score = sqlUnsigned(row[4]);
+ret->strand = cloneString(row[5]);
+ret->thickStart = sqlUnsigned(row[6]);
+ret->thickEnd = sqlUnsigned(row[7]);
+return ret;
+}
+
+struct mouseOrtho *mouseOrthoLoadAll(char *fileName) 
+/* Load all mouseOrtho from a tab-separated file.
+ * Dispose of this with mouseOrthoFreeList(). */
+{
+struct mouseOrtho *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[8];
+
+while (lineFileRow(lf, row))
+    {
+    el = mouseOrthoLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct mouseOrtho *mouseOrthoLoadWhere(struct sqlConnection *conn, char *table, char *where)
+/* Load all mouseOrtho from table that satisfy where clause. The
+ * where clause may be NULL in which case whole table is loaded
+ * Dispose of this with mouseOrthoFreeList(). */
+{
+struct mouseOrtho *list = NULL, *el;
+struct dyString *query = dyStringNew(256);
+struct sqlResult *sr;
+char **row;
+
+sqlDyStringPrintf(query, "select * from %s", table);
+if (where != NULL)
+    dyStringPrintf(query, " where %s", where);
+sr = sqlGetResult(conn, query->string);
+while ((row = sqlNextRow(sr)) != NULL)
+    {
+    el = mouseOrthoLoad(row);
+    slAddHead(&list, el);
+    }
+slReverse(&list);
+sqlFreeResult(&sr);
+dyStringFree(&query);
+return list;
+}
+
+struct mouseOrtho *mouseOrthoCommaIn(char **pS, struct mouseOrtho *ret)
+/* Create a mouseOrtho out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new mouseOrtho */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlUnsignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->score = sqlUnsignedComma(&s);
+ret->strand = sqlStringComma(&s);
+ret->thickStart = sqlUnsignedComma(&s);
+ret->thickEnd = sqlUnsignedComma(&s);
+*pS = s;
+return ret;
+}
+
+void mouseOrthoFree(struct mouseOrtho **pEl)
+/* Free a single dynamically allocated mouseOrtho such as created
+ * with mouseOrthoLoad(). */
+{
+struct mouseOrtho *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+freeMem(el->strand);
+freez(pEl);
+}
+
+void mouseOrthoFreeList(struct mouseOrtho **pList)
+/* Free a list of dynamically allocated mouseOrtho's */
+{
+struct mouseOrtho *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    mouseOrthoFree(&el);
+    }
+*pList = NULL;
+}
+
+void mouseOrthoOutput(struct mouseOrtho *el, FILE *f, char sep, char lastSep) 
+/* Print out mouseOrtho.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->score);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->strand);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->thickStart);
+fputc(sep,f);
+fprintf(f, "%u", el->thickEnd);
+fputc(lastSep,f);
+}
+