533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/cgilib/rhMapZfishInfo.c src/hg/cgilib/rhMapZfishInfo.c new file mode 100644 index 0000000..19b7ac2 --- /dev/null +++ src/hg/cgilib/rhMapZfishInfo.c @@ -0,0 +1,184 @@ +/* rhMapZfishInfo.c was originally generated by the autoSql program, which also + * generated rhMapZfishInfo.h and rhMapZfishInfo.sql. This module links the database and + * the RAM representation of objects. */ + +/* Copyright (C) 2014 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + +#include "common.h" +#include "linefile.h" +#include "dystring.h" +#include "jksql.h" +#include "rhMapZfishInfo.h" + + +void rhMapZfishInfoStaticLoad(char **row, struct rhMapZfishInfo *ret) +/* Load a row from rhMapZfishInfo table into ret. The contents of ret will + * be replaced at the next call to this function. */ +{ + +ret->name = row[0]; +ret->zfinId = row[1]; +ret->linkageGp = row[2]; +ret->position = sqlUnsigned(row[3]); +ret->distance = sqlUnsigned(row[4]); +ret->markerType = row[5]; +ret->source = row[6]; +ret->mapSite = row[7]; +ret->leftPrimer = row[8]; +ret->rightPrimer = row[9]; +} + +struct rhMapZfishInfo *rhMapZfishInfoLoad(char **row) +/* Load a rhMapZfishInfo from row fetched with select * from rhMapZfishInfo + * from database. Dispose of this with rhMapZfishInfoFree(). */ +{ +struct rhMapZfishInfo *ret; + +AllocVar(ret); +ret->name = cloneString(row[0]); +ret->zfinId = cloneString(row[1]); +ret->linkageGp = cloneString(row[2]); +ret->position = sqlUnsigned(row[3]); +ret->distance = sqlUnsigned(row[4]); +ret->markerType = cloneString(row[5]); +ret->source = cloneString(row[6]); +ret->mapSite = cloneString(row[7]); +ret->leftPrimer = cloneString(row[8]); +ret->rightPrimer = cloneString(row[9]); +return ret; +} + +struct rhMapZfishInfo *rhMapZfishInfoLoadAll(char *fileName) +/* Load all rhMapZfishInfo from a whitespace-separated file. + * Dispose of this with rhMapZfishInfoFreeList(). */ +{ +struct rhMapZfishInfo *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[10]; + +while (lineFileRow(lf, row)) + { + el = rhMapZfishInfoLoad(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct rhMapZfishInfo *rhMapZfishInfoLoadAllByChar(char *fileName, char chopper) +/* Load all rhMapZfishInfo from a chopper separated file. + * Dispose of this with rhMapZfishInfoFreeList(). */ +{ +struct rhMapZfishInfo *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[10]; + +while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) + { + el = rhMapZfishInfoLoad(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct rhMapZfishInfo *rhMapZfishInfoCommaIn(char **pS, struct rhMapZfishInfo *ret) +/* Create a rhMapZfishInfo out of a comma separated string. + * This will fill in ret if non-null, otherwise will + * return a new rhMapZfishInfo */ +{ +char *s = *pS; + +if (ret == NULL) + AllocVar(ret); +ret->name = sqlStringComma(&s); +ret->zfinId = sqlStringComma(&s); +ret->linkageGp = sqlStringComma(&s); +ret->position = sqlUnsignedComma(&s); +ret->distance = sqlUnsignedComma(&s); +ret->markerType = sqlStringComma(&s); +ret->source = sqlStringComma(&s); +ret->mapSite = sqlStringComma(&s); +ret->leftPrimer = sqlStringComma(&s); +ret->rightPrimer = sqlStringComma(&s); +*pS = s; +return ret; +} + +void rhMapZfishInfoFree(struct rhMapZfishInfo **pEl) +/* Free a single dynamically allocated rhMapZfishInfo such as created + * with rhMapZfishInfoLoad(). */ +{ +struct rhMapZfishInfo *el; + +if ((el = *pEl) == NULL) return; +freeMem(el->name); +freeMem(el->zfinId); +freeMem(el->linkageGp); +freeMem(el->markerType); +freeMem(el->source); +freeMem(el->mapSite); +freeMem(el->leftPrimer); +freeMem(el->rightPrimer); +freez(pEl); +} + +void rhMapZfishInfoFreeList(struct rhMapZfishInfo **pList) +/* Free a list of dynamically allocated rhMapZfishInfo's */ +{ +struct rhMapZfishInfo *el, *next; + +for (el = *pList; el != NULL; el = next) + { + next = el->next; + rhMapZfishInfoFree(&el); + } +*pList = NULL; +} + +void rhMapZfishInfoOutput(struct rhMapZfishInfo *el, FILE *f, char sep, char lastSep) +/* Print out rhMapZfishInfo. Separate fields with sep. Follow last field with lastSep. */ +{ +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->name); +if (sep == ',') fputc('"',f); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->zfinId); +if (sep == ',') fputc('"',f); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->linkageGp); +if (sep == ',') fputc('"',f); +fputc(sep,f); +fprintf(f, "%u", el->position); +fputc(sep,f); +fprintf(f, "%u", el->distance); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->markerType); +if (sep == ',') fputc('"',f); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->source); +if (sep == ',') fputc('"',f); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->mapSite); +if (sep == ',') fputc('"',f); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->leftPrimer); +if (sep == ',') fputc('"',f); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->rightPrimer); +if (sep == ',') fputc('"',f); +fputc(lastSep,f); +} + +/* -------------------------------- End autoSql Generated Code -------------------------------- */ +