533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/rnaFold.c src/hg/cgilib/rnaFold.c
new file mode 100644
index 0000000..eb6229d
--- /dev/null
+++ src/hg/cgilib/rnaFold.c
@@ -0,0 +1,139 @@
+/* rnaFold.c was originally generated by the autoSql program, which also 
+ * generated rnaFold.h and rnaFold.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "rnaFold.h"
+
+
+void rnaFoldStaticLoad(char **row, struct rnaFold *ret)
+/* Load a row from rnaFold table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->name = row[0];
+ret->seq = row[1];
+ret->fold = row[2];
+ret->energy = atof(row[3]);
+}
+
+struct rnaFold *rnaFoldLoad(char **row)
+/* Load a rnaFold from row fetched with select * from rnaFold
+ * from database.  Dispose of this with rnaFoldFree(). */
+{
+struct rnaFold *ret;
+
+AllocVar(ret);
+ret->name = cloneString(row[0]);
+ret->seq = cloneString(row[1]);
+ret->fold = cloneString(row[2]);
+ret->energy = atof(row[3]);
+return ret;
+}
+
+struct rnaFold *rnaFoldLoadAll(char *fileName) 
+/* Load all rnaFold from a whitespace-separated file.
+ * Dispose of this with rnaFoldFreeList(). */
+{
+struct rnaFold *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[4];
+
+while (lineFileRow(lf, row))
+    {
+    el = rnaFoldLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct rnaFold *rnaFoldLoadAllByChar(char *fileName, char chopper) 
+/* Load all rnaFold from a chopper separated file.
+ * Dispose of this with rnaFoldFreeList(). */
+{
+struct rnaFold *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[4];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = rnaFoldLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct rnaFold *rnaFoldCommaIn(char **pS, struct rnaFold *ret)
+/* Create a rnaFold out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new rnaFold */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->name = sqlStringComma(&s);
+ret->seq = sqlStringComma(&s);
+ret->fold = sqlStringComma(&s);
+ret->energy = sqlFloatComma(&s);
+*pS = s;
+return ret;
+}
+
+void rnaFoldFree(struct rnaFold **pEl)
+/* Free a single dynamically allocated rnaFold such as created
+ * with rnaFoldLoad(). */
+{
+struct rnaFold *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->name);
+freeMem(el->seq);
+freeMem(el->fold);
+freez(pEl);
+}
+
+void rnaFoldFreeList(struct rnaFold **pList)
+/* Free a list of dynamically allocated rnaFold's */
+{
+struct rnaFold *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    rnaFoldFree(&el);
+    }
+*pList = NULL;
+}
+
+void rnaFoldOutput(struct rnaFold *el, FILE *f, char sep, char lastSep) 
+/* Print out rnaFold.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->seq);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->fold);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%f", el->energy);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+