533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/transMapGene.c src/hg/cgilib/transMapGene.c
new file mode 100644
index 0000000..45e0802
--- /dev/null
+++ src/hg/cgilib/transMapGene.c
@@ -0,0 +1,168 @@
+/* transMapGene.c was originally generated by the autoSql program, which also 
+ * generated transMapGene.h and transMapGene.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "transMapGene.h"
+
+char *transMapGeneCommaSepFieldNames4 = "id,cds,db,geneName";   // previous version without geneId column
+char *transMapGeneCommaSepFieldNames = "id,cds,db,geneName,geneId";
+
+void transMapGeneStaticLoad(char **row, struct transMapGene *ret)
+/* Load a row from transMapGene table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->id = row[0];
+ret->cds = row[1];
+safecpy(ret->db, sizeof(ret->db), row[2]);
+ret->geneName = row[3];
+ret->geneId = row[4];
+}
+
+struct transMapGene *transMapGeneLoad(char **row)
+/* Load a transMapGene from row fetched with select * from transMapGene
+ * from database.  Dispose of this with transMapGeneFree(). */
+{
+struct transMapGene *ret;
+
+AllocVar(ret);
+ret->id = cloneString(row[0]);
+ret->cds = cloneString(row[1]);
+safecpy(ret->db, sizeof(ret->db), row[2]);
+ret->geneName = cloneString(row[3]);
+ret->geneId = cloneString(row[4]);
+return ret;
+}
+
+struct transMapGene *transMapGeneLoadAll(char *fileName) 
+/* Load all transMapGene from a whitespace-separated file.
+ * Dispose of this with transMapGeneFreeList(). */
+{
+struct transMapGene *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[5];
+
+while (lineFileRow(lf, row))
+    {
+    el = transMapGeneLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct transMapGene *transMapGeneLoadAllByChar(char *fileName, char chopper) 
+/* Load all transMapGene from a chopper separated file.
+ * Dispose of this with transMapGeneFreeList(). */
+{
+struct transMapGene *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[5];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = transMapGeneLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct transMapGene *transMapGeneCommaIn(char **pS, struct transMapGene *ret)
+/* Create a transMapGene out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new transMapGene */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->id = sqlStringComma(&s);
+ret->cds = sqlStringComma(&s);
+sqlFixedStringComma(&s, ret->db, sizeof(ret->db));
+ret->geneName = sqlStringComma(&s);
+ret->geneId = sqlStringComma(&s);
+*pS = s;
+return ret;
+}
+
+void transMapGeneFree(struct transMapGene **pEl)
+/* Free a single dynamically allocated transMapGene such as created
+ * with transMapGeneLoad(). */
+{
+struct transMapGene *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->id);
+freeMem(el->cds);
+freeMem(el->geneName);
+freeMem(el->geneId);
+freez(pEl);
+}
+
+void transMapGeneFreeList(struct transMapGene **pList)
+/* Free a list of dynamically allocated transMapGene's */
+{
+struct transMapGene *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    transMapGeneFree(&el);
+    }
+*pList = NULL;
+}
+
+void transMapGeneOutput(struct transMapGene *el, FILE *f, char sep, char lastSep) 
+/* Print out transMapGene.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->id);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->cds);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->db);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->geneName);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->geneId);
+if (sep == ',') fputc('"',f);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+struct transMapGene *transMapGeneQuery(struct sqlConnection *geneConn,
+                                       char *table, char *srcDb, char *srcId)
+/* load a single transMapSrc object for an srcDb and srcId from a table,
+ * or return NULL if not found */
+{
+/* geneId field was added after original table definition.  Return empty string
+ * in query for legacy tables. */
+if (sqlFieldIndex(geneConn, table, "geneId") >= 0)
+    return sqlQueryObjs(geneConn, (sqlLoadFunc)transMapGeneLoad,
+                        sqlQuerySingle,
+                        "SELECT %-s FROM %s WHERE (db=\"%s\") and (id = \"%s\")",
+                        transMapGeneCommaSepFieldNames, table, srcDb, srcId);
+else
+    return sqlQueryObjs(geneConn, (sqlLoadFunc)transMapGeneLoad,
+                        sqlQuerySingle,
+                        "SELECT %-s,\"\" FROM %s WHERE (db=\"%s\") and (id = \"%s\")",
+                        transMapGeneCommaSepFieldNames4, table, srcDb, srcId);
+}