533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/chicken13kInfo.c src/hg/lib/chicken13kInfo.c
deleted file mode 100644
index 7289dce..0000000
--- src/hg/lib/chicken13kInfo.c
+++ /dev/null
@@ -1,242 +0,0 @@
-/* chicken13kInfo.c was originally generated by the autoSql program, which also 
- * generated chicken13kInfo.h and chicken13kInfo.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "chicken13kInfo.h"
-
-
-void chicken13kInfoStaticLoad(char **row, struct chicken13kInfo *ret)
-/* Load a row from chicken13kInfo table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->id = row[0];
-ret->source = row[1];
-strcpy(ret->pcr, row[2]);
-ret->library = row[3];
-ret->clone = row[4];
-ret->gbkAcc = row[5];
-ret->blat = row[6];
-ret->sourceAnnot = row[7];
-ret->tigrTc = row[8];
-ret->tigrTcAnnot = row[9];
-ret->blastAnnot = row[10];
-ret->comment = row[11];
-}
-
-struct chicken13kInfo *chicken13kInfoLoad(char **row)
-/* Load a chicken13kInfo from row fetched with select * from chicken13kInfo
- * from database.  Dispose of this with chicken13kInfoFree(). */
-{
-struct chicken13kInfo *ret;
-
-AllocVar(ret);
-ret->id = cloneString(row[0]);
-ret->source = cloneString(row[1]);
-strcpy(ret->pcr, row[2]);
-ret->library = cloneString(row[3]);
-ret->clone = cloneString(row[4]);
-ret->gbkAcc = cloneString(row[5]);
-ret->blat = cloneString(row[6]);
-ret->sourceAnnot = cloneString(row[7]);
-ret->tigrTc = cloneString(row[8]);
-ret->tigrTcAnnot = cloneString(row[9]);
-ret->blastAnnot = cloneString(row[10]);
-ret->comment = cloneString(row[11]);
-return ret;
-}
-
-struct chicken13kInfo *chicken13kInfoLoadAll(char *fileName) 
-/* Load all chicken13kInfo from a whitespace-separated file.
- * Dispose of this with chicken13kInfoFreeList(). */
-{
-struct chicken13kInfo *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[12];
-
-while (lineFileRow(lf, row))
-    {
-    el = chicken13kInfoLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct chicken13kInfo *chicken13kInfoLoadAllByChar(char *fileName, char chopper) 
-/* Load all chicken13kInfo from a chopper separated file.
- * Dispose of this with chicken13kInfoFreeList(). */
-{
-struct chicken13kInfo *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[12];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = chicken13kInfoLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct chicken13kInfo *chicken13kInfoLoadByQuery(struct sqlConnection *conn, char *query)
-/* Load all chicken13kInfo from table that satisfy the query given.  
- * Where query is of the form 'select * from example where something=something'
- * or 'select example.* from example, anotherTable where example.something = 
- * anotherTable.something'.
- * Dispose of this with chicken13kInfoFreeList(). */
-{
-struct chicken13kInfo *list = NULL, *el;
-struct sqlResult *sr;
-char **row;
-
-sr = sqlGetResult(conn, query);
-while ((row = sqlNextRow(sr)) != NULL)
-    {
-    el = chicken13kInfoLoad(row);
-    slAddHead(&list, el);
-    }
-slReverse(&list);
-sqlFreeResult(&sr);
-return list;
-}
-
-void chicken13kInfoSaveToDb(struct sqlConnection *conn, struct chicken13kInfo *el, char *tableName, int updateSize)
-/* Save chicken13kInfo as a row to the table specified by tableName. 
- * As blob fields may be arbitrary size updateSize specifies the approx size
- * of a string that would contain the entire query. Arrays of native types are
- * converted to comma separated strings and loaded as such, User defined types are
- * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
-{
-struct dyString *update = newDyString(updateSize);
-sqlDyStringPrintf(update, "insert into %s values ( '%s','%s','%s','%s','%s','%s','%s',%s,'%s',%s,%s,%s)", 
-	tableName,  el->id,  el->source,  el->pcr,  el->library,  el->clone,  el->gbkAcc,  el->blat,  el->sourceAnnot,  el->tigrTc,  el->tigrTcAnnot,  el->blastAnnot,  el->comment);
-sqlUpdate(conn, update->string);
-freeDyString(&update);
-}
-
-
-struct chicken13kInfo *chicken13kInfoCommaIn(char **pS, struct chicken13kInfo *ret)
-/* Create a chicken13kInfo out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new chicken13kInfo */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->id = sqlStringComma(&s);
-ret->source = sqlStringComma(&s);
-sqlFixedStringComma(&s, ret->pcr, sizeof(ret->pcr));
-ret->library = sqlStringComma(&s);
-ret->clone = sqlStringComma(&s);
-ret->gbkAcc = sqlStringComma(&s);
-ret->blat = sqlStringComma(&s);
-ret->sourceAnnot = sqlStringComma(&s);
-ret->tigrTc = sqlStringComma(&s);
-ret->tigrTcAnnot = sqlStringComma(&s);
-ret->blastAnnot = sqlStringComma(&s);
-ret->comment = sqlStringComma(&s);
-*pS = s;
-return ret;
-}
-
-void chicken13kInfoFree(struct chicken13kInfo **pEl)
-/* Free a single dynamically allocated chicken13kInfo such as created
- * with chicken13kInfoLoad(). */
-{
-struct chicken13kInfo *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->id);
-freeMem(el->source);
-freeMem(el->library);
-freeMem(el->clone);
-freeMem(el->gbkAcc);
-freeMem(el->blat);
-freeMem(el->sourceAnnot);
-freeMem(el->tigrTc);
-freeMem(el->tigrTcAnnot);
-freeMem(el->blastAnnot);
-freeMem(el->comment);
-freez(pEl);
-}
-
-void chicken13kInfoFreeList(struct chicken13kInfo **pList)
-/* Free a list of dynamically allocated chicken13kInfo's */
-{
-struct chicken13kInfo *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    chicken13kInfoFree(&el);
-    }
-*pList = NULL;
-}
-
-void chicken13kInfoOutput(struct chicken13kInfo *el, FILE *f, char sep, char lastSep) 
-/* Print out chicken13kInfo.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->id);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->source);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->pcr);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->library);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->clone);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->gbkAcc);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->blat);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->sourceAnnot);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->tigrTc);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->tigrTcAnnot);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->blastAnnot);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->comment);
-if (sep == ',') fputc('"',f);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-