533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/cnpSharp.c src/hg/lib/cnpSharp.c
deleted file mode 100644
index c3d9051..0000000
--- src/hg/lib/cnpSharp.c
+++ /dev/null
@@ -1,195 +0,0 @@
-/* cnpSharp.c was originally generated by the autoSql program, which also 
- * generated cnpSharp.h and cnpSharp.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "cnpSharp.h"
-
-
-void cnpSharpStaticLoad(char **row, struct cnpSharp *ret)
-/* Load a row from cnpSharp table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->chrom = row[0];
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = row[3];
-ret->variationType = row[4];
-ret->cytoName = row[5];
-ret->cytoStrain = row[6];
-ret->dupPercent = atof(row[7]);
-ret->repeatsPercent = atof(row[8]);
-ret->LINEpercent = atof(row[9]);
-ret->SINEpercent = atof(row[10]);
-ret->LTRpercent = atof(row[11]);
-ret->DNApercent = atof(row[12]);
-ret->diseaseSpotsPercent = atof(row[13]);
-}
-
-struct cnpSharp *cnpSharpLoad(char **row)
-/* Load a cnpSharp from row fetched with select * from cnpSharp
- * from database.  Dispose of this with cnpSharpFree(). */
-{
-struct cnpSharp *ret;
-
-AllocVar(ret);
-ret->chrom = cloneString(row[0]);
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = cloneString(row[3]);
-ret->variationType = cloneString(row[4]);
-ret->cytoName = cloneString(row[5]);
-ret->cytoStrain = cloneString(row[6]);
-ret->dupPercent = atof(row[7]);
-ret->repeatsPercent = atof(row[8]);
-ret->LINEpercent = atof(row[9]);
-ret->SINEpercent = atof(row[10]);
-ret->LTRpercent = atof(row[11]);
-ret->DNApercent = atof(row[12]);
-ret->diseaseSpotsPercent = atof(row[13]);
-return ret;
-}
-
-struct cnpSharp *cnpSharpLoadAll(char *fileName) 
-/* Load all cnpSharp from a whitespace-separated file.
- * Dispose of this with cnpSharpFreeList(). */
-{
-struct cnpSharp *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[14];
-
-while (lineFileRow(lf, row))
-    {
-    el = cnpSharpLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct cnpSharp *cnpSharpLoadAllByChar(char *fileName, char chopper) 
-/* Load all cnpSharp from a chopper separated file.
- * Dispose of this with cnpSharpFreeList(). */
-{
-struct cnpSharp *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[14];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = cnpSharpLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct cnpSharp *cnpSharpCommaIn(char **pS, struct cnpSharp *ret)
-/* Create a cnpSharp out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new cnpSharp */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->chrom = sqlStringComma(&s);
-ret->chromStart = sqlUnsignedComma(&s);
-ret->chromEnd = sqlUnsignedComma(&s);
-ret->name = sqlStringComma(&s);
-ret->variationType = sqlStringComma(&s);
-ret->cytoName = sqlStringComma(&s);
-ret->cytoStrain = sqlStringComma(&s);
-ret->dupPercent = sqlFloatComma(&s);
-ret->repeatsPercent = sqlFloatComma(&s);
-ret->LINEpercent = sqlFloatComma(&s);
-ret->SINEpercent = sqlFloatComma(&s);
-ret->LTRpercent = sqlFloatComma(&s);
-ret->DNApercent = sqlFloatComma(&s);
-ret->diseaseSpotsPercent = sqlFloatComma(&s);
-*pS = s;
-return ret;
-}
-
-void cnpSharpFree(struct cnpSharp **pEl)
-/* Free a single dynamically allocated cnpSharp such as created
- * with cnpSharpLoad(). */
-{
-struct cnpSharp *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->chrom);
-freeMem(el->name);
-freeMem(el->variationType);
-freeMem(el->cytoName);
-freeMem(el->cytoStrain);
-freez(pEl);
-}
-
-void cnpSharpFreeList(struct cnpSharp **pList)
-/* Free a list of dynamically allocated cnpSharp's */
-{
-struct cnpSharp *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    cnpSharpFree(&el);
-    }
-*pList = NULL;
-}
-
-void cnpSharpOutput(struct cnpSharp *el, FILE *f, char sep, char lastSep) 
-/* Print out cnpSharp.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chromStart);
-fputc(sep,f);
-fprintf(f, "%u", el->chromEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->variationType);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->cytoName);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->cytoStrain);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%g", el->dupPercent);
-fputc(sep,f);
-fprintf(f, "%g", el->repeatsPercent);
-fputc(sep,f);
-fprintf(f, "%g", el->LINEpercent);
-fputc(sep,f);
-fprintf(f, "%g", el->SINEpercent);
-fputc(sep,f);
-fprintf(f, "%g", el->LTRpercent);
-fputc(sep,f);
-fprintf(f, "%g", el->DNApercent);
-fputc(sep,f);
-fprintf(f, "%g", el->diseaseSpotsPercent);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-