533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/ctgPos2.c src/hg/lib/ctgPos2.c deleted file mode 100644 index 6ab504d..0000000 --- src/hg/lib/ctgPos2.c +++ /dev/null @@ -1,148 +0,0 @@ -/* ctgPos2.c was originally generated by the autoSql program, which also - * generated ctgPos2.h and ctgPos2.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "ctgPos2.h" - - -void ctgPos2StaticLoad(char **row, struct ctgPos2 *ret) -/* Load a row from ctgPos2 table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -ret->contig = row[0]; -ret->size = sqlUnsigned(row[1]); -ret->chrom = row[2]; -ret->chromStart = sqlUnsigned(row[3]); -ret->chromEnd = sqlUnsigned(row[4]); -strcpy(ret->type, row[5]); -} - -struct ctgPos2 *ctgPos2Load(char **row) -/* Load a ctgPos2 from row fetched with select * from ctgPos2 - * from database. Dispose of this with ctgPos2Free(). */ -{ -struct ctgPos2 *ret; - -AllocVar(ret); -ret->contig = cloneString(row[0]); -ret->size = sqlUnsigned(row[1]); -ret->chrom = cloneString(row[2]); -ret->chromStart = sqlUnsigned(row[3]); -ret->chromEnd = sqlUnsigned(row[4]); -strcpy(ret->type, row[5]); -return ret; -} - -struct ctgPos2 *ctgPos2LoadAll(char *fileName) -/* Load all ctgPos2 from a whitespace-separated file. - * Dispose of this with ctgPos2FreeList(). */ -{ -struct ctgPos2 *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[6]; - -while (lineFileRow(lf, row)) - { - el = ctgPos2Load(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct ctgPos2 *ctgPos2LoadAllByChar(char *fileName, char chopper) -/* Load all ctgPos2 from a chopper separated file. - * Dispose of this with ctgPos2FreeList(). */ -{ -struct ctgPos2 *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[6]; - -while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) - { - el = ctgPos2Load(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct ctgPos2 *ctgPos2CommaIn(char **pS, struct ctgPos2 *ret) -/* Create a ctgPos2 out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new ctgPos2 */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->contig = sqlStringComma(&s); -ret->size = sqlUnsignedComma(&s); -ret->chrom = sqlStringComma(&s); -ret->chromStart = sqlUnsignedComma(&s); -ret->chromEnd = sqlUnsignedComma(&s); -sqlFixedStringComma(&s, ret->type, sizeof(ret->type)); -*pS = s; -return ret; -} - -void ctgPos2Free(struct ctgPos2 **pEl) -/* Free a single dynamically allocated ctgPos2 such as created - * with ctgPos2Load(). */ -{ -struct ctgPos2 *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->contig); -freeMem(el->chrom); -freez(pEl); -} - -void ctgPos2FreeList(struct ctgPos2 **pList) -/* Free a list of dynamically allocated ctgPos2's */ -{ -struct ctgPos2 *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - ctgPos2Free(&el); - } -*pList = NULL; -} - -void ctgPos2Output(struct ctgPos2 *el, FILE *f, char sep, char lastSep) -/* Print out ctgPos2. Separate fields with sep. Follow last field with lastSep. */ -{ -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->contig); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->size); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->chrom); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->chromStart); -fputc(sep,f); -fprintf(f, "%u", el->chromEnd); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->type); -if (sep == ',') fputc('"',f); -fputc(lastSep,f); -} - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ -