533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/dbSnpDetails.c src/hg/lib/dbSnpDetails.c
deleted file mode 100644
index bbe8a1a..0000000
--- src/hg/lib/dbSnpDetails.c
+++ /dev/null
@@ -1,346 +0,0 @@
-/* dbSnpDetails.c was originally generated by the autoSql program, which also 
- * generated dbSnpDetails.h and dbSnpDetails.sql.  This module links the database and
- * the RAM representation of objects. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "dbSnpDetails.h"
-
-
-
-char *dbSnpDetailsCommaSepFieldNames = "name,freqSourceCount,alleleCounts,alleleTotals,soTermCount,soTerms,clinVarCount,clinVarAccs,clinVarSigs,submitterCount,submitters,pubMedIdCount,pubMedIds";
-
-struct dbSnpDetails *dbSnpDetailsLoad(char **row)
-/* Load a dbSnpDetails from row fetched with select * from dbSnpDetails
- * from database.  Dispose of this with dbSnpDetailsFree(). */
-{
-struct dbSnpDetails *ret;
-
-AllocVar(ret);
-ret->freqSourceCount = sqlSigned(row[1]);
-ret->soTermCount = sqlSigned(row[4]);
-ret->clinVarCount = sqlSigned(row[6]);
-ret->submitterCount = sqlSigned(row[9]);
-ret->pubMedIdCount = sqlSigned(row[11]);
-ret->name = cloneString(row[0]);
-{
-int sizeOne;
-sqlStringDynamicArray(row[2], &ret->alleleCounts, &sizeOne);
-assert(sizeOne == ret->freqSourceCount);
-}
-{
-int sizeOne;
-sqlSignedDynamicArray(row[3], &ret->alleleTotals, &sizeOne);
-assert(sizeOne == ret->freqSourceCount);
-}
-{
-int sizeOne;
-sqlSignedDynamicArray(row[5], &ret->soTerms, &sizeOne);
-assert(sizeOne == ret->soTermCount);
-}
-{
-int sizeOne;
-sqlStringDynamicArray(row[7], &ret->clinVarAccs, &sizeOne);
-assert(sizeOne == ret->clinVarCount);
-}
-{
-int sizeOne;
-sqlStringDynamicArray(row[8], &ret->clinVarSigs, &sizeOne);
-assert(sizeOne == ret->clinVarCount);
-}
-{
-int sizeOne;
-sqlStringDynamicArray(row[10], &ret->submitters, &sizeOne);
-assert(sizeOne == ret->submitterCount);
-}
-{
-int sizeOne;
-sqlSignedDynamicArray(row[12], &ret->pubMedIds, &sizeOne);
-assert(sizeOne == ret->pubMedIdCount);
-}
-return ret;
-}
-
-struct dbSnpDetails *dbSnpDetailsLoadAll(char *fileName) 
-/* Load all dbSnpDetails from a whitespace-separated file.
- * Dispose of this with dbSnpDetailsFreeList(). */
-{
-struct dbSnpDetails *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[13];
-
-while (lineFileRow(lf, row))
-    {
-    el = dbSnpDetailsLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct dbSnpDetails *dbSnpDetailsLoadAllByChar(char *fileName, char chopper) 
-/* Load all dbSnpDetails from a chopper separated file.
- * Dispose of this with dbSnpDetailsFreeList(). */
-{
-struct dbSnpDetails *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[13];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = dbSnpDetailsLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct dbSnpDetails *dbSnpDetailsCommaIn(char **pS, struct dbSnpDetails *ret)
-/* Create a dbSnpDetails out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new dbSnpDetails */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->name = sqlStringComma(&s);
-ret->freqSourceCount = sqlSignedComma(&s);
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->alleleCounts, ret->freqSourceCount);
-for (i=0; i<ret->freqSourceCount; ++i)
-    {
-    ret->alleleCounts[i] = sqlStringComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->alleleTotals, ret->freqSourceCount);
-for (i=0; i<ret->freqSourceCount; ++i)
-    {
-    ret->alleleTotals[i] = sqlSignedComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-ret->soTermCount = sqlSignedComma(&s);
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->soTerms, ret->soTermCount);
-for (i=0; i<ret->soTermCount; ++i)
-    {
-    ret->soTerms[i] = sqlSignedComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-ret->clinVarCount = sqlSignedComma(&s);
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->clinVarAccs, ret->clinVarCount);
-for (i=0; i<ret->clinVarCount; ++i)
-    {
-    ret->clinVarAccs[i] = sqlStringComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->clinVarSigs, ret->clinVarCount);
-for (i=0; i<ret->clinVarCount; ++i)
-    {
-    ret->clinVarSigs[i] = sqlStringComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-ret->submitterCount = sqlSignedComma(&s);
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->submitters, ret->submitterCount);
-for (i=0; i<ret->submitterCount; ++i)
-    {
-    ret->submitters[i] = sqlStringComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-ret->pubMedIdCount = sqlSignedComma(&s);
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->pubMedIds, ret->pubMedIdCount);
-for (i=0; i<ret->pubMedIdCount; ++i)
-    {
-    ret->pubMedIds[i] = sqlSignedComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-*pS = s;
-return ret;
-}
-
-void dbSnpDetailsFree(struct dbSnpDetails **pEl)
-/* Free a single dynamically allocated dbSnpDetails such as created
- * with dbSnpDetailsLoad(). */
-{
-struct dbSnpDetails *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->name);
-/* All strings in alleleCounts are allocated at once, so only need to free first. */
-if (el->alleleCounts != NULL)
-    freeMem(el->alleleCounts[0]);
-freeMem(el->alleleCounts);
-freeMem(el->alleleTotals);
-freeMem(el->soTerms);
-/* All strings in clinVarAccs are allocated at once, so only need to free first. */
-if (el->clinVarAccs != NULL)
-    freeMem(el->clinVarAccs[0]);
-freeMem(el->clinVarAccs);
-/* All strings in clinVarSigs are allocated at once, so only need to free first. */
-if (el->clinVarSigs != NULL)
-    freeMem(el->clinVarSigs[0]);
-freeMem(el->clinVarSigs);
-/* All strings in submitters are allocated at once, so only need to free first. */
-if (el->submitters != NULL)
-    freeMem(el->submitters[0]);
-freeMem(el->submitters);
-freeMem(el->pubMedIds);
-freez(pEl);
-}
-
-void dbSnpDetailsFreeList(struct dbSnpDetails **pList)
-/* Free a list of dynamically allocated dbSnpDetails's */
-{
-struct dbSnpDetails *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    dbSnpDetailsFree(&el);
-    }
-*pList = NULL;
-}
-
-void dbSnpDetailsOutput(struct dbSnpDetails *el, FILE *f, char sep, char lastSep) 
-/* Print out dbSnpDetails.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%d", el->freqSourceCount);
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->freqSourceCount; ++i)
-    {
-    if (sep == ',') fputc('"',f);
-    fprintf(f, "%s", el->alleleCounts[i]);
-    if (sep == ',') fputc('"',f);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->freqSourceCount; ++i)
-    {
-    fprintf(f, "%d", el->alleleTotals[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-fprintf(f, "%d", el->soTermCount);
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->soTermCount; ++i)
-    {
-    fprintf(f, "%d", el->soTerms[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-fprintf(f, "%d", el->clinVarCount);
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->clinVarCount; ++i)
-    {
-    if (sep == ',') fputc('"',f);
-    fprintf(f, "%s", el->clinVarAccs[i]);
-    if (sep == ',') fputc('"',f);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->clinVarCount; ++i)
-    {
-    if (sep == ',') fputc('"',f);
-    fprintf(f, "%s", el->clinVarSigs[i]);
-    if (sep == ',') fputc('"',f);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-fprintf(f, "%d", el->submitterCount);
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->submitterCount; ++i)
-    {
-    if (sep == ',') fputc('"',f);
-    fprintf(f, "%s", el->submitters[i]);
-    if (sep == ',') fputc('"',f);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-fprintf(f, "%d", el->pubMedIdCount);
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->pubMedIdCount; ++i)
-    {
-    fprintf(f, "%d", el->pubMedIds[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-