533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/dbSnpRs.c src/hg/lib/dbSnpRs.c
deleted file mode 100644
index e56a76d..0000000
--- src/hg/lib/dbSnpRs.c
+++ /dev/null
@@ -1,213 +0,0 @@
-/* dbSnpRs.c was originally generated by the autoSql program, which also 
- * generated dbSnpRs.h and dbSnpRs.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "dbSnpRs.h"
-
-
-void dbSnpRsStaticLoad(char **row, struct dbSnpRs *ret)
-/* Load a row from dbSnpRs table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->rsId = row[0];
-ret->avHet = atof(row[1]);
-ret->avHetSE = atof(row[2]);
-ret->valid = row[3];
-ret->allele1 = row[4];
-ret->allele2 = row[5];
-ret->assembly = row[6];
-ret->alternate = row[7];
-ret->func = row[8];
-}
-
-struct dbSnpRs *dbSnpRsLoad(char **row)
-/* Load a dbSnpRs from row fetched with select * from dbSnpRs
- * from database.  Dispose of this with dbSnpRsFree(). */
-{
-struct dbSnpRs *ret;
-
-AllocVar(ret);
-ret->rsId = cloneString(row[0]);
-ret->avHet = atof(row[1]);
-ret->avHetSE = atof(row[2]);
-ret->valid = cloneString(row[3]);
-ret->allele1 = cloneString(row[4]);
-ret->allele2 = cloneString(row[5]);
-ret->assembly = cloneString(row[6]);
-ret->alternate = cloneString(row[7]);
-ret->func = cloneString(row[8]);
-return ret;
-}
-
-struct dbSnpRs *dbSnpRsLoadAll(char *fileName) 
-/* Load all dbSnpRs from a whitespace-separated file.
- * Dispose of this with dbSnpRsFreeList(). */
-{
-struct dbSnpRs *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[9];
-
-while (lineFileRow(lf, row))
-    {
-    el = dbSnpRsLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct dbSnpRs *dbSnpRsLoadAllByChar(char *fileName, char chopper) 
-/* Load all dbSnpRs from a chopper separated file.
- * Dispose of this with dbSnpRsFreeList(). */
-{
-struct dbSnpRs *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[9];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = dbSnpRsLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct dbSnpRs *dbSnpRsLoadByQuery(struct sqlConnection *conn, char *query)
-/* Load all dbSnpRs from table that satisfy the query given.  
- * Where query is of the form 'select * from example where something=something'
- * or 'select example.* from example, anotherTable where example.something = 
- * anotherTable.something'.
- * Dispose of this with dbSnpRsFreeList(). */
-{
-struct dbSnpRs *list = NULL, *el;
-struct sqlResult *sr;
-char **row;
-
-sr = sqlGetResult(conn, query);
-while ((row = sqlNextRow(sr)) != NULL)
-    {
-    el = dbSnpRsLoad(row);
-    slAddHead(&list, el);
-    }
-slReverse(&list);
-sqlFreeResult(&sr);
-return list;
-}
-
-void dbSnpRsSaveToDb(struct sqlConnection *conn, struct dbSnpRs *el, char *tableName, int updateSize)
-/* Save dbSnpRs as a row to the table specified by tableName. 
- * As blob fields may be arbitrary size updateSize specifies the approx size
- * of a string that would contain the entire query. Arrays of native types are
- * converted to comma separated strings and loaded as such, User defined types are
- * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
-{
-struct dyString *update = newDyString(updateSize);
-sqlDyStringPrintf(update, "insert into %s values ( '%s',%f,%f,'%s','%s','%s','%s','%s','%s')", 
-	tableName,  el->rsId,  el->avHet,  el->avHetSE,  el->valid,  el->allele1,  el->allele2,  el->assembly,  el->alternate,  el->func);
-sqlUpdate(conn, update->string);
-freeDyString(&update);
-}
-
-
-struct dbSnpRs *dbSnpRsCommaIn(char **pS, struct dbSnpRs *ret)
-/* Create a dbSnpRs out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new dbSnpRs */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->rsId = sqlStringComma(&s);
-ret->avHet = sqlFloatComma(&s);
-ret->avHetSE = sqlFloatComma(&s);
-ret->valid = sqlStringComma(&s);
-ret->allele1 = sqlStringComma(&s);
-ret->allele2 = sqlStringComma(&s);
-ret->assembly = sqlStringComma(&s);
-ret->alternate = sqlStringComma(&s);
-ret->func = sqlStringComma(&s);
-*pS = s;
-return ret;
-}
-
-void dbSnpRsFree(struct dbSnpRs **pEl)
-/* Free a single dynamically allocated dbSnpRs such as created
- * with dbSnpRsLoad(). */
-{
-struct dbSnpRs *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->rsId);
-freeMem(el->valid);
-freeMem(el->allele1);
-freeMem(el->allele2);
-freeMem(el->assembly);
-freeMem(el->alternate);
-freeMem(el->func);
-freez(pEl);
-}
-
-void dbSnpRsFreeList(struct dbSnpRs **pList)
-/* Free a list of dynamically allocated dbSnpRs's */
-{
-struct dbSnpRs *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    dbSnpRsFree(&el);
-    }
-*pList = NULL;
-}
-
-void dbSnpRsOutput(struct dbSnpRs *el, FILE *f, char sep, char lastSep) 
-/* Print out dbSnpRs.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->rsId);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%f", el->avHet);
-fputc(sep,f);
-fprintf(f, "%f", el->avHetSE);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->valid);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->allele1);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->allele2);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->assembly);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->alternate);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->func);
-if (sep == ',') fputc('"',f);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-