533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/gbMiscDiff.c src/hg/lib/gbMiscDiff.c
deleted file mode 100644
index d343a1c..0000000
--- src/hg/lib/gbMiscDiff.c
+++ /dev/null
@@ -1,151 +0,0 @@
-/* gbMiscDiff.c was originally generated by the autoSql program, which also 
- * generated gbMiscDiff.h and gbMiscDiff.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "gbMiscDiff.h"
-
-
-void gbMiscDiffStaticLoad(char **row, struct gbMiscDiff *ret)
-/* Load a row from gbMiscDiff table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-strcpy(ret->acc, row[0]);
-ret->mrnaStart = sqlSigned(row[1]);
-ret->mrnaEnd = sqlSigned(row[2]);
-ret->notes = row[3];
-ret->gene = row[4];
-ret->replacement = row[5];
-}
-
-struct gbMiscDiff *gbMiscDiffLoad(char **row)
-/* Load a gbMiscDiff from row fetched with select * from gbMiscDiff
- * from database.  Dispose of this with gbMiscDiffFree(). */
-{
-struct gbMiscDiff *ret;
-
-AllocVar(ret);
-strcpy(ret->acc, row[0]);
-ret->mrnaStart = sqlSigned(row[1]);
-ret->mrnaEnd = sqlSigned(row[2]);
-ret->notes = cloneString(row[3]);
-ret->gene = cloneString(row[4]);
-ret->replacement = cloneString(row[5]);
-return ret;
-}
-
-struct gbMiscDiff *gbMiscDiffLoadAll(char *fileName) 
-/* Load all gbMiscDiff from a whitespace-separated file.
- * Dispose of this with gbMiscDiffFreeList(). */
-{
-struct gbMiscDiff *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[6];
-
-while (lineFileRow(lf, row))
-    {
-    el = gbMiscDiffLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct gbMiscDiff *gbMiscDiffLoadAllByChar(char *fileName, char chopper) 
-/* Load all gbMiscDiff from a chopper separated file.
- * Dispose of this with gbMiscDiffFreeList(). */
-{
-struct gbMiscDiff *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[6];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = gbMiscDiffLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct gbMiscDiff *gbMiscDiffCommaIn(char **pS, struct gbMiscDiff *ret)
-/* Create a gbMiscDiff out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new gbMiscDiff */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-sqlFixedStringComma(&s, ret->acc, sizeof(ret->acc));
-ret->mrnaStart = sqlSignedComma(&s);
-ret->mrnaEnd = sqlSignedComma(&s);
-ret->notes = sqlStringComma(&s);
-ret->gene = sqlStringComma(&s);
-ret->replacement = sqlStringComma(&s);
-*pS = s;
-return ret;
-}
-
-void gbMiscDiffFree(struct gbMiscDiff **pEl)
-/* Free a single dynamically allocated gbMiscDiff such as created
- * with gbMiscDiffLoad(). */
-{
-struct gbMiscDiff *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->notes);
-freeMem(el->gene);
-freeMem(el->replacement);
-freez(pEl);
-}
-
-void gbMiscDiffFreeList(struct gbMiscDiff **pList)
-/* Free a list of dynamically allocated gbMiscDiff's */
-{
-struct gbMiscDiff *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    gbMiscDiffFree(&el);
-    }
-*pList = NULL;
-}
-
-void gbMiscDiffOutput(struct gbMiscDiff *el, FILE *f, char sep, char lastSep) 
-/* Print out gbMiscDiff.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->acc);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%d", el->mrnaStart);
-fputc(sep,f);
-fprintf(f, "%d", el->mrnaEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->notes);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->gene);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->replacement);
-if (sep == ',') fputc('"',f);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-