533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/gbProtAnn.c src/hg/lib/gbProtAnn.c deleted file mode 100644 index e5599cd..0000000 --- src/hg/lib/gbProtAnn.c +++ /dev/null @@ -1,147 +0,0 @@ -/* gbProtAnn.c was originally generated by the autoSql program, which also - * generated gbProtAnn.h and gbProtAnn.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "gbProtAnn.h" - - -void gbProtAnnStaticLoad(char **row, struct gbProtAnn *ret) -/* Load a row from gbProtAnn table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -ret->chrom = row[0]; -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->name = row[3]; -ret->product = row[4]; -ret->note = row[5]; -ret->proteinId = row[6]; -ret->giId = sqlUnsigned(row[7]); -} - -struct gbProtAnn *gbProtAnnLoad(char **row) -/* Load a gbProtAnn from row fetched with select * from gbProtAnn - * from database. Dispose of this with gbProtAnnFree(). */ -{ -struct gbProtAnn *ret; - -AllocVar(ret); -ret->chrom = cloneString(row[0]); -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->name = cloneString(row[3]); -ret->product = cloneString(row[4]); -ret->note = cloneString(row[5]); -ret->proteinId = cloneString(row[6]); -ret->giId = sqlUnsigned(row[7]); -return ret; -} - -struct gbProtAnn *gbProtAnnLoadAll(char *fileName) -/* Load all gbProtAnn from a tab-separated file. - * Dispose of this with gbProtAnnFreeList(). */ -{ -struct gbProtAnn *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[8]; - -while (lineFileRow(lf, row)) - { - el = gbProtAnnLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct gbProtAnn *gbProtAnnCommaIn(char **pS, struct gbProtAnn *ret) -/* Create a gbProtAnn out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new gbProtAnn */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->chrom = sqlStringComma(&s); -ret->chromStart = sqlUnsignedComma(&s); -ret->chromEnd = sqlUnsignedComma(&s); -ret->name = sqlStringComma(&s); -ret->product = sqlStringComma(&s); -ret->note = sqlStringComma(&s); -ret->proteinId = sqlStringComma(&s); -ret->giId = sqlUnsignedComma(&s); -*pS = s; -return ret; -} - -void gbProtAnnFree(struct gbProtAnn **pEl) -/* Free a single dynamically allocated gbProtAnn such as created - * with gbProtAnnLoad(). */ -{ -struct gbProtAnn *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->chrom); -freeMem(el->name); -freeMem(el->product); -freeMem(el->note); -freeMem(el->proteinId); -freez(pEl); -} - -void gbProtAnnFreeList(struct gbProtAnn **pList) -/* Free a list of dynamically allocated gbProtAnn's */ -{ -struct gbProtAnn *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - gbProtAnnFree(&el); - } -*pList = NULL; -} - -void gbProtAnnOutput(struct gbProtAnn *el, FILE *f, char sep, char lastSep) -/* Print out gbProtAnn. Separate fields with sep. Follow last field with lastSep. */ -{ -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->chrom); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->chromStart); -fputc(sep,f); -fprintf(f, "%u", el->chromEnd); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->name); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->product); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->note); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->proteinId); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->giId); -fputc(lastSep,f); -} - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ -