533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/gencodeToPubMed.c src/hg/lib/gencodeToPubMed.c deleted file mode 100644 index 3faa4d8..0000000 --- src/hg/lib/gencodeToPubMed.c +++ /dev/null @@ -1,123 +0,0 @@ -/* gencodeToPubMed.c was originally generated by the autoSql program, which also - * generated gencodeToPubMed.h and gencodeToPubMed.sql. This module links the database and - * the RAM representation of objects. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "gencodeToPubMed.h" - - - -char *gencodeToPubMedCommaSepFieldNames = "transcriptId,pubMedId"; - -void gencodeToPubMedStaticLoad(char **row, struct gencodeToPubMed *ret) -/* Load a row from gencodeToPubMed table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -ret->transcriptId = row[0]; -ret->pubMedId = sqlSigned(row[1]); -} - -struct gencodeToPubMed *gencodeToPubMedLoad(char **row) -/* Load a gencodeToPubMed from row fetched with select * from gencodeToPubMed - * from database. Dispose of this with gencodeToPubMedFree(). */ -{ -struct gencodeToPubMed *ret; - -AllocVar(ret); -ret->transcriptId = cloneString(row[0]); -ret->pubMedId = sqlSigned(row[1]); -return ret; -} - -struct gencodeToPubMed *gencodeToPubMedLoadAll(char *fileName) -/* Load all gencodeToPubMed from a whitespace-separated file. - * Dispose of this with gencodeToPubMedFreeList(). */ -{ -struct gencodeToPubMed *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[2]; - -while (lineFileRow(lf, row)) - { - el = gencodeToPubMedLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct gencodeToPubMed *gencodeToPubMedLoadAllByChar(char *fileName, char chopper) -/* Load all gencodeToPubMed from a chopper separated file. - * Dispose of this with gencodeToPubMedFreeList(). */ -{ -struct gencodeToPubMed *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[2]; - -while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) - { - el = gencodeToPubMedLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct gencodeToPubMed *gencodeToPubMedCommaIn(char **pS, struct gencodeToPubMed *ret) -/* Create a gencodeToPubMed out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new gencodeToPubMed */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->transcriptId = sqlStringComma(&s); -ret->pubMedId = sqlSignedComma(&s); -*pS = s; -return ret; -} - -void gencodeToPubMedFree(struct gencodeToPubMed **pEl) -/* Free a single dynamically allocated gencodeToPubMed such as created - * with gencodeToPubMedLoad(). */ -{ -struct gencodeToPubMed *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->transcriptId); -freez(pEl); -} - -void gencodeToPubMedFreeList(struct gencodeToPubMed **pList) -/* Free a list of dynamically allocated gencodeToPubMed's */ -{ -struct gencodeToPubMed *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - gencodeToPubMedFree(&el); - } -*pList = NULL; -} - -void gencodeToPubMedOutput(struct gencodeToPubMed *el, FILE *f, char sep, char lastSep) -/* Print out gencodeToPubMed. Separate fields with sep. Follow last field with lastSep. */ -{ -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->transcriptId); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%d", el->pubMedId); -fputc(lastSep,f); -} - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ -