533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/genomicDups.c src/hg/lib/genomicDups.c
deleted file mode 100644
index 542058e..0000000
--- src/hg/lib/genomicDups.c
+++ /dev/null
@@ -1,151 +0,0 @@
-/* genomicDups.c was originally generated by the autoSql program, which also 
- * generated genomicDups.h and genomicDups.sql.  This module links the database and the RAM 
- * representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "jksql.h"
-#include "genomicDups.h"
-
-
-void genomicDupsStaticLoad(char **row, struct genomicDups *ret)
-/* Load a row from genomicDups table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->chrom = row[0];
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = row[3];
-ret->score = sqlUnsigned(row[4]);
-strcpy(ret->strand, row[5]);
-ret->otherChrom = row[6];
-ret->otherStart = sqlUnsigned(row[7]);
-ret->otherEnd = sqlUnsigned(row[8]);
-ret->alignB = sqlUnsigned(row[9]);
-ret->matchB = sqlUnsigned(row[10]);
-ret->mismatchB = sqlUnsigned(row[11]);
-ret->fracMatch = atof(row[12]);
-ret->jcK = atof(row[13]);
-}
-
-struct genomicDups *genomicDupsLoad(char **row)
-/* Load a genomicDups from row fetched with select * from genomicDups
- * from database.  Dispose of this with genomicDupsFree(). */
-{
-struct genomicDups *ret;
-
-AllocVar(ret);
-ret->chrom = cloneString(row[0]);
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = cloneString(row[3]);
-ret->score = sqlUnsigned(row[4]);
-strcpy(ret->strand, row[5]);
-ret->otherChrom = cloneString(row[6]);
-ret->otherStart = sqlUnsigned(row[7]);
-ret->otherEnd = sqlUnsigned(row[8]);
-ret->alignB = sqlUnsigned(row[9]);
-ret->matchB = sqlUnsigned(row[10]);
-ret->mismatchB = sqlUnsigned(row[11]);
-ret->fracMatch = atof(row[12]);
-ret->jcK = atof(row[13]);
-return ret;
-}
-
-struct genomicDups *genomicDupsCommaIn(char **pS, struct genomicDups *ret)
-/* Create a genomicDups out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new genomicDups */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->chrom = sqlStringComma(&s);
-ret->chromStart = sqlUnsignedComma(&s);
-ret->chromEnd = sqlUnsignedComma(&s);
-ret->name = sqlStringComma(&s);
-ret->score = sqlUnsignedComma(&s);
-sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
-ret->otherChrom = sqlStringComma(&s);
-ret->otherStart = sqlUnsignedComma(&s);
-ret->otherEnd = sqlUnsignedComma(&s);
-ret->alignB = sqlUnsignedComma(&s);
-ret->matchB = sqlUnsignedComma(&s);
-ret->mismatchB = sqlUnsignedComma(&s);
-ret->fracMatch = sqlSignedComma(&s);
-ret->jcK = sqlSignedComma(&s);
-*pS = s;
-return ret;
-}
-
-void genomicDupsFree(struct genomicDups **pEl)
-/* Free a single dynamically allocated genomicDups such as created
- * with genomicDupsLoad(). */
-{
-struct genomicDups *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->chrom);
-freeMem(el->name);
-freeMem(el->otherChrom);
-freez(pEl);
-}
-
-void genomicDupsFreeList(struct genomicDups **pList)
-/* Free a list of dynamically allocated genomicDups's */
-{
-struct genomicDups *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    genomicDupsFree(&el);
-    }
-*pList = NULL;
-}
-
-void genomicDupsOutput(struct genomicDups *el, FILE *f, char sep, char lastSep) 
-/* Print out genomicDups.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chromStart);
-fputc(sep,f);
-fprintf(f, "%u", el->chromEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->score);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->strand);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->otherChrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->otherStart);
-fputc(sep,f);
-fprintf(f, "%u", el->otherEnd);
-fputc(sep,f);
-fprintf(f, "%u", el->alignB);
-fputc(sep,f);
-fprintf(f, "%u", el->matchB);
-fputc(sep,f);
-fprintf(f, "%u", el->mismatchB);
-fputc(sep,f);
-fprintf(f, "%f", el->fracMatch);
-fputc(sep,f);
-fprintf(f, "%f", el->jcK);
-fputc(lastSep,f);
-}
-