533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/kg1ToKg2.c src/hg/lib/kg1ToKg2.c deleted file mode 100644 index d712373..0000000 --- src/hg/lib/kg1ToKg2.c +++ /dev/null @@ -1,160 +0,0 @@ -/* kg1ToKg2.c was originally generated by the autoSql program, which also - * generated kg1ToKg2.h and kg1ToKg2.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "kg1ToKg2.h" - - -void kg1ToKg2StaticLoad(char **row, struct kg1ToKg2 *ret) -/* Load a row from kg1ToKg2 table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -ret->oldId = row[0]; -ret->oldChrom = row[1]; -ret->oldStart = sqlSigned(row[2]); -ret->oldEnd = sqlSigned(row[3]); -ret->newId = row[4]; -ret->status = row[5]; -ret->note = row[6]; -} - -struct kg1ToKg2 *kg1ToKg2Load(char **row) -/* Load a kg1ToKg2 from row fetched with select * from kg1ToKg2 - * from database. Dispose of this with kg1ToKg2Free(). */ -{ -struct kg1ToKg2 *ret; - -AllocVar(ret); -ret->oldId = cloneString(row[0]); -ret->oldChrom = cloneString(row[1]); -ret->oldStart = sqlSigned(row[2]); -ret->oldEnd = sqlSigned(row[3]); -ret->newId = cloneString(row[4]); -ret->status = cloneString(row[5]); -ret->note = cloneString(row[6]); -return ret; -} - -struct kg1ToKg2 *kg1ToKg2LoadAll(char *fileName) -/* Load all kg1ToKg2 from a whitespace-separated file. - * Dispose of this with kg1ToKg2FreeList(). */ -{ -struct kg1ToKg2 *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[7]; - -while (lineFileRow(lf, row)) - { - el = kg1ToKg2Load(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct kg1ToKg2 *kg1ToKg2LoadAllByChar(char *fileName, char chopper) -/* Load all kg1ToKg2 from a chopper separated file. - * Dispose of this with kg1ToKg2FreeList(). */ -{ -struct kg1ToKg2 *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[7]; - -while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) - { - el = kg1ToKg2Load(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct kg1ToKg2 *kg1ToKg2CommaIn(char **pS, struct kg1ToKg2 *ret) -/* Create a kg1ToKg2 out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new kg1ToKg2 */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->oldId = sqlStringComma(&s); -ret->oldChrom = sqlStringComma(&s); -ret->oldStart = sqlSignedComma(&s); -ret->oldEnd = sqlSignedComma(&s); -ret->newId = sqlStringComma(&s); -ret->status = sqlStringComma(&s); -ret->note = sqlStringComma(&s); -*pS = s; -return ret; -} - -void kg1ToKg2Free(struct kg1ToKg2 **pEl) -/* Free a single dynamically allocated kg1ToKg2 such as created - * with kg1ToKg2Load(). */ -{ -struct kg1ToKg2 *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->oldId); -freeMem(el->oldChrom); -freeMem(el->newId); -freeMem(el->status); -freeMem(el->note); -freez(pEl); -} - -void kg1ToKg2FreeList(struct kg1ToKg2 **pList) -/* Free a list of dynamically allocated kg1ToKg2's */ -{ -struct kg1ToKg2 *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - kg1ToKg2Free(&el); - } -*pList = NULL; -} - -void kg1ToKg2Output(struct kg1ToKg2 *el, FILE *f, char sep, char lastSep) -/* Print out kg1ToKg2. Separate fields with sep. Follow last field with lastSep. */ -{ -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->oldId); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->oldChrom); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%d", el->oldStart); -fputc(sep,f); -fprintf(f, "%d", el->oldEnd); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->newId); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->status); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->note); -if (sep == ',') fputc('"',f); -fputc(lastSep,f); -} - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ -