533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/pscreen.c src/hg/lib/pscreen.c deleted file mode 100644 index 36f116c..0000000 --- src/hg/lib/pscreen.c +++ /dev/null @@ -1,176 +0,0 @@ -/* pscreen.c was originally generated by the autoSql program, which also - * generated pscreen.h and pscreen.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "pscreen.h" - - -struct pscreen *pscreenLoad(char **row) -/* Load a pscreen from row fetched with select * from pscreen - * from database. Dispose of this with pscreenFree(). */ -{ -struct pscreen *ret; - -AllocVar(ret); -ret->geneCount = sqlUnsigned(row[7]); -ret->chrom = cloneString(row[0]); -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->name = cloneString(row[3]); -ret->score = sqlUnsigned(row[4]); -strcpy(ret->strand, row[5]); -ret->stockNumber = sqlUnsigned(row[6]); -{ -int sizeOne; -sqlStringDynamicArray(row[8], &ret->geneIds, &sizeOne); -assert(sizeOne == ret->geneCount); -} -return ret; -} - -struct pscreen *pscreenLoadAll(char *fileName) -/* Load all pscreen from a whitespace-separated file. - * Dispose of this with pscreenFreeList(). */ -{ -struct pscreen *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[9]; - -while (lineFileRow(lf, row)) - { - el = pscreenLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct pscreen *pscreenLoadAllByChar(char *fileName, char chopper) -/* Load all pscreen from a chopper separated file. - * Dispose of this with pscreenFreeList(). */ -{ -struct pscreen *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[9]; - -while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) - { - el = pscreenLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct pscreen *pscreenCommaIn(char **pS, struct pscreen *ret) -/* Create a pscreen out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new pscreen */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->chrom = sqlStringComma(&s); -ret->chromStart = sqlUnsignedComma(&s); -ret->chromEnd = sqlUnsignedComma(&s); -ret->name = sqlStringComma(&s); -ret->score = sqlUnsignedComma(&s); -sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand)); -ret->stockNumber = sqlUnsignedComma(&s); -ret->geneCount = sqlUnsignedComma(&s); -{ -int i; -s = sqlEatChar(s, '{'); -AllocArray(ret->geneIds, ret->geneCount); -for (i=0; i<ret->geneCount; ++i) - { - ret->geneIds[i] = sqlStringComma(&s); - } -s = sqlEatChar(s, '}'); -s = sqlEatChar(s, ','); -} -*pS = s; -return ret; -} - -void pscreenFree(struct pscreen **pEl) -/* Free a single dynamically allocated pscreen such as created - * with pscreenLoad(). */ -{ -struct pscreen *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->chrom); -freeMem(el->name); -/* All strings in geneIds are allocated at once, so only need to free first. */ -if (el->geneIds != NULL) - freeMem(el->geneIds[0]); -freeMem(el->geneIds); -freez(pEl); -} - -void pscreenFreeList(struct pscreen **pList) -/* Free a list of dynamically allocated pscreen's */ -{ -struct pscreen *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - pscreenFree(&el); - } -*pList = NULL; -} - -void pscreenOutput(struct pscreen *el, FILE *f, char sep, char lastSep) -/* Print out pscreen. Separate fields with sep. Follow last field with lastSep. */ -{ -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->chrom); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->chromStart); -fputc(sep,f); -fprintf(f, "%u", el->chromEnd); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->name); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->score); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->strand); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->stockNumber); -fputc(sep,f); -fprintf(f, "%u", el->geneCount); -fputc(sep,f); -{ -int i; -if (sep == ',') fputc('{',f); -for (i=0; i<el->geneCount; ++i) - { - if (sep == ',') fputc('"',f); - fprintf(f, "%s", el->geneIds[i]); - if (sep == ',') fputc('"',f); - fputc(',', f); - } -if (sep == ',') fputc('}',f); -} -fputc(lastSep,f); -} - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ -