533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/recombRate.c src/hg/lib/recombRate.c deleted file mode 100644 index 1ee1237..0000000 --- src/hg/lib/recombRate.c +++ /dev/null @@ -1,186 +0,0 @@ -/* recombRate.c was originally generated by the autoSql program, which also - * generated recombRate.h and recombRate.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "recombRate.h" - - -void recombRateStaticLoad(char **row, struct recombRate *ret) -/* Load a row from recombRate table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -ret->chrom = row[0]; -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->name = row[3]; -ret->decodeAvg = atof(row[4]); -ret->decodeFemale = atof(row[5]); -ret->decodeMale = atof(row[6]); -ret->marshfieldAvg = atof(row[7]); -ret->marshfieldFemale = atof(row[8]); -ret->marshfieldMale = atof(row[9]); -ret->genethonAvg = atof(row[10]); -ret->genethonFemale = atof(row[11]); -ret->genethonMale = atof(row[12]); -} - -struct recombRate *recombRateLoad(char **row) -/* Load a recombRate from row fetched with select * from recombRate - * from database. Dispose of this with recombRateFree(). */ -{ -struct recombRate *ret; - -AllocVar(ret); -ret->chrom = cloneString(row[0]); -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->name = cloneString(row[3]); -ret->decodeAvg = atof(row[4]); -ret->decodeFemale = atof(row[5]); -ret->decodeMale = atof(row[6]); -ret->marshfieldAvg = atof(row[7]); -ret->marshfieldFemale = atof(row[8]); -ret->marshfieldMale = atof(row[9]); -ret->genethonAvg = atof(row[10]); -ret->genethonFemale = atof(row[11]); -ret->genethonMale = atof(row[12]); -return ret; -} - -struct recombRate *recombRateLoadAll(char *fileName) -/* Load all recombRate from a tab-separated file. - * Dispose of this with recombRateFreeList(). */ -{ -struct recombRate *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[13]; - -while (lineFileRow(lf, row)) - { - el = recombRateLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct recombRate *recombRateLoadWhere(struct sqlConnection *conn, char *table, char *where) -/* Load all recombRate from table that satisfy where clause. The - * where clause may be NULL in which case whole table is loaded - * Dispose of this with recombRateFreeList(). */ -{ -struct recombRate *list = NULL, *el; -struct dyString *query = dyStringNew(256); -struct sqlResult *sr; -char **row; - -sqlDyStringPrintf(query, "select * from %s", table); -if (where != NULL) - dyStringPrintf(query, " where %s", where); -sr = sqlGetResult(conn, query->string); -while ((row = sqlNextRow(sr)) != NULL) - { - el = recombRateLoad(row); - slAddHead(&list, el); - } -slReverse(&list); -sqlFreeResult(&sr); -dyStringFree(&query); -return list; -} - -struct recombRate *recombRateCommaIn(char **pS, struct recombRate *ret) -/* Create a recombRate out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new recombRate */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->chrom = sqlStringComma(&s); -ret->chromStart = sqlUnsignedComma(&s); -ret->chromEnd = sqlUnsignedComma(&s); -ret->name = sqlStringComma(&s); -ret->decodeAvg = sqlFloatComma(&s); -ret->decodeFemale = sqlFloatComma(&s); -ret->decodeMale = sqlFloatComma(&s); -ret->marshfieldAvg = sqlFloatComma(&s); -ret->marshfieldFemale = sqlFloatComma(&s); -ret->marshfieldMale = sqlFloatComma(&s); -ret->genethonAvg = sqlFloatComma(&s); -ret->genethonFemale = sqlFloatComma(&s); -ret->genethonMale = sqlFloatComma(&s); -*pS = s; -return ret; -} - -void recombRateFree(struct recombRate **pEl) -/* Free a single dynamically allocated recombRate such as created - * with recombRateLoad(). */ -{ -struct recombRate *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->chrom); -freeMem(el->name); -freez(pEl); -} - -void recombRateFreeList(struct recombRate **pList) -/* Free a list of dynamically allocated recombRate's */ -{ -struct recombRate *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - recombRateFree(&el); - } -*pList = NULL; -} - -void recombRateOutput(struct recombRate *el, FILE *f, char sep, char lastSep) -/* Print out recombRate. Separate fields with sep. Follow last field with lastSep. */ -{ -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->chrom); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->chromStart); -fputc(sep,f); -fprintf(f, "%u", el->chromEnd); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->name); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%f", el->decodeAvg); -fputc(sep,f); -fprintf(f, "%f", el->decodeFemale); -fputc(sep,f); -fprintf(f, "%f", el->decodeMale); -fputc(sep,f); -fprintf(f, "%f", el->marshfieldAvg); -fputc(sep,f); -fprintf(f, "%f", el->marshfieldFemale); -fputc(sep,f); -fprintf(f, "%f", el->marshfieldMale); -fputc(sep,f); -fprintf(f, "%f", el->genethonAvg); -fputc(sep,f); -fprintf(f, "%f", el->genethonFemale); -fputc(sep,f); -fprintf(f, "%f", el->genethonMale); -fputc(lastSep,f); -} -