533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/rnaPLFold.c src/hg/lib/rnaPLFold.c deleted file mode 100644 index 58c9a7f..0000000 --- src/hg/lib/rnaPLFold.c +++ /dev/null @@ -1,141 +0,0 @@ -/* rnaPLFold.c was originally generated by the autoSql program, which also - * generated rnaPLFold.h and rnaPLFold.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "rnaPLFold.h" - - -void rnaPLFoldStaticLoad(char **row, struct rnaPLFold *ret) -/* Load a row from rnaPLFold table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -ret->chrom = row[0]; -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->span = sqlUnsigned(row[3]); -ret->colorIndex = row[4]; -} - -struct rnaPLFold *rnaPLFoldLoad(char **row) -/* Load a rnaPLFold from row fetched with select * from rnaPLFold - * from database. Dispose of this with rnaPLFoldFree(). */ -{ -struct rnaPLFold *ret; - -AllocVar(ret); -ret->chrom = cloneString(row[0]); -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->span = sqlUnsigned(row[3]); -ret->colorIndex = cloneString(row[4]); -return ret; -} - -struct rnaPLFold *rnaPLFoldLoadAll(char *fileName) -/* Load all rnaPLFold from a whitespace-separated file. - * Dispose of this with rnaPLFoldFreeList(). */ -{ -struct rnaPLFold *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[5]; - -while (lineFileRow(lf, row)) - { - el = rnaPLFoldLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct rnaPLFold *rnaPLFoldLoadAllByChar(char *fileName, char chopper) -/* Load all rnaPLFold from a chopper separated file. - * Dispose of this with rnaPLFoldFreeList(). */ -{ -struct rnaPLFold *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[5]; - -while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) - { - el = rnaPLFoldLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct rnaPLFold *rnaPLFoldCommaIn(char **pS, struct rnaPLFold *ret) -/* Create a rnaPLFold out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new rnaPLFold */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->chrom = sqlStringComma(&s); -ret->chromStart = sqlUnsignedComma(&s); -ret->chromEnd = sqlUnsignedComma(&s); -ret->span = sqlUnsignedComma(&s); -ret->colorIndex = sqlStringComma(&s); -*pS = s; -return ret; -} - -void rnaPLFoldFree(struct rnaPLFold **pEl) -/* Free a single dynamically allocated rnaPLFold such as created - * with rnaPLFoldLoad(). */ -{ -struct rnaPLFold *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->chrom); -freeMem(el->colorIndex); -freez(pEl); -} - -void rnaPLFoldFreeList(struct rnaPLFold **pList) -/* Free a list of dynamically allocated rnaPLFold's */ -{ -struct rnaPLFold *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - rnaPLFoldFree(&el); - } -*pList = NULL; -} - -void rnaPLFoldOutput(struct rnaPLFold *el, FILE *f, char sep, char lastSep) -/* Print out rnaPLFold. Separate fields with sep. Follow last field with lastSep. */ -{ -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->chrom); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->chromStart); -fputc(sep,f); -fprintf(f, "%u", el->chromEnd); -fputc(sep,f); -fprintf(f, "%u", el->span); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->colorIndex); -if (sep == ',') fputc('"',f); -fputc(lastSep,f); -} - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ -