533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/sageExp.c src/hg/lib/sageExp.c deleted file mode 100644 index 6532967..0000000 --- src/hg/lib/sageExp.c +++ /dev/null @@ -1,163 +0,0 @@ -/* sageExp.c was originally generated by the autoSql program, which also - * generated sageExp.h and sageExp.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "jksql.h" -#include "sageExp.h" - - -void sageExpStaticLoad(char **row, struct sageExp *ret) -/* Load a row from sageExp table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -ret->num = sqlSigned(row[0]); -ret->exp = row[1]; -ret->totalCount = sqlSigned(row[2]); -ret->tissueType = row[3]; -ret->tissueDesc = row[4]; -ret->tissueSupplier = row[5]; -ret->organism = row[6]; -ret->organ = row[7]; -ret->producer = row[8]; -ret->desription = row[9]; -} - -struct sageExp *sageExpLoad(char **row) -/* Load a sageExp from row fetched with select * from sageExp - * from database. Dispose of this with sageExpFree(). */ -{ -struct sageExp *ret; - -AllocVar(ret); -ret->num = sqlSigned(row[0]); -ret->exp = cloneString(row[1]); -ret->totalCount = sqlSigned(row[2]); -ret->tissueType = cloneString(row[3]); -ret->tissueDesc = cloneString(row[4]); -ret->tissueSupplier = cloneString(row[5]); -ret->organism = cloneString(row[6]); -ret->organ = cloneString(row[7]); -ret->producer = cloneString(row[8]); -ret->desription = cloneString(row[9]); -return ret; -} - -struct sageExp *sageExpLoadAll(char *fileName) -/* Load all sageExp from a tab-separated file. - * Dispose of this with sageExpFreeList(). */ -{ -struct sageExp *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[10]; - -while (lineFileRow(lf, row)) - { - el = sageExpLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct sageExp *sageExpCommaIn(char **pS, struct sageExp *ret) -/* Create a sageExp out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new sageExp */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->num = sqlSignedComma(&s); -ret->exp = sqlStringComma(&s); -ret->totalCount = sqlSignedComma(&s); -ret->tissueType = sqlStringComma(&s); -ret->tissueDesc = sqlStringComma(&s); -ret->tissueSupplier = sqlStringComma(&s); -ret->organism = sqlStringComma(&s); -ret->organ = sqlStringComma(&s); -ret->producer = sqlStringComma(&s); -ret->desription = sqlStringComma(&s); -*pS = s; -return ret; -} - -void sageExpFree(struct sageExp **pEl) -/* Free a single dynamically allocated sageExp such as created - * with sageExpLoad(). */ -{ -struct sageExp *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->exp); -freeMem(el->tissueType); -freeMem(el->tissueDesc); -freeMem(el->tissueSupplier); -freeMem(el->organism); -freeMem(el->organ); -freeMem(el->producer); -freeMem(el->desription); -freez(pEl); -} - -void sageExpFreeList(struct sageExp **pList) -/* Free a list of dynamically allocated sageExp's */ -{ -struct sageExp *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - sageExpFree(&el); - } -*pList = NULL; -} - -void sageExpOutput(struct sageExp *el, FILE *f, char sep, char lastSep) -/* Print out sageExp. Separate fields with sep. Follow last field with lastSep. */ -{ -fprintf(f, "%d", el->num); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->exp); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%d", el->totalCount); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->tissueType); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->tissueDesc); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->tissueSupplier); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->organism); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->organ); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->producer); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->desription); -if (sep == ',') fputc('"',f); -fputc(lastSep,f); -} -