533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/snp132Ext.c src/hg/lib/snp132Ext.c
deleted file mode 100644
index a90fe3a..0000000
--- src/hg/lib/snp132Ext.c
+++ /dev/null
@@ -1,348 +0,0 @@
-/* snp132Ext.c was originally generated by the autoSql program, which also 
- * generated snp132Ext.h and snp132Ext.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "snp132Ext.h"
-
-
-struct snp132Ext *snp132ExtLoad(char **row)
-/* Load a snp132Ext from row fetched with select * from snp132Ext
- * from database.  Dispose of this with snp132ExtFree(). */
-{
-struct snp132Ext *ret;
-
-AllocVar(ret);
-ret->submitterCount = sqlSigned(row[18]);
-ret->alleleFreqCount = sqlSigned(row[20]);
-ret->chrom = cloneString(row[0]);
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = cloneString(row[3]);
-ret->score = sqlUnsigned(row[4]);
-ret->strand = cloneString(row[5]);
-ret->refNCBI = cloneString(row[6]);
-ret->refUCSC = cloneString(row[7]);
-ret->observed = cloneString(row[8]);
-ret->molType = cloneString(row[9]);
-ret->class = cloneString(row[10]);
-ret->valid = cloneString(row[11]);
-ret->avHet = sqlFloat(row[12]);
-ret->avHetSE = sqlFloat(row[13]);
-ret->func = cloneString(row[14]);
-ret->locType = cloneString(row[15]);
-ret->weight = sqlUnsigned(row[16]);
-ret->exceptions = cloneString(row[17]);
-{
-int sizeOne;
-sqlStringDynamicArray(row[19], &ret->submitters, &sizeOne);
-assert(sizeOne == ret->submitterCount);
-}
-{
-int sizeOne;
-sqlStringDynamicArray(row[21], &ret->alleles, &sizeOne);
-assert(sizeOne == ret->alleleFreqCount);
-}
-{
-int sizeOne;
-sqlFloatDynamicArray(row[22], &ret->alleleNs, &sizeOne);
-assert(sizeOne == ret->alleleFreqCount);
-}
-{
-int sizeOne;
-sqlFloatDynamicArray(row[23], &ret->alleleFreqs, &sizeOne);
-assert(sizeOne == ret->alleleFreqCount);
-}
-ret->bitfields = cloneString(row[24]);
-return ret;
-}
-
-struct snp132Ext *snp132ExtLoadAll(char *fileName) 
-/* Load all snp132Ext from a whitespace-separated file.
- * Dispose of this with snp132ExtFreeList(). */
-{
-struct snp132Ext *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[25];
-
-while (lineFileRow(lf, row))
-    {
-    el = snp132ExtLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct snp132Ext *snp132ExtLoadAllByChar(char *fileName, char chopper) 
-/* Load all snp132Ext from a chopper separated file.
- * Dispose of this with snp132ExtFreeList(). */
-{
-struct snp132Ext *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[25];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = snp132ExtLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct snp132Ext *snp132ExtCommaIn(char **pS, struct snp132Ext *ret)
-/* Create a snp132Ext out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new snp132Ext */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->chrom = sqlStringComma(&s);
-ret->chromStart = sqlUnsignedComma(&s);
-ret->chromEnd = sqlUnsignedComma(&s);
-ret->name = sqlStringComma(&s);
-ret->score = sqlUnsignedComma(&s);
-ret->strand = sqlStringComma(&s);
-ret->refNCBI = sqlStringComma(&s);
-ret->refUCSC = sqlStringComma(&s);
-ret->observed = sqlStringComma(&s);
-ret->molType = sqlStringComma(&s);
-ret->class = sqlStringComma(&s);
-ret->valid = sqlStringComma(&s);
-ret->avHet = sqlFloatComma(&s);
-ret->avHetSE = sqlFloatComma(&s);
-ret->func = sqlStringComma(&s);
-ret->locType = sqlStringComma(&s);
-ret->weight = sqlUnsignedComma(&s);
-ret->exceptions = sqlStringComma(&s);
-ret->submitterCount = sqlSignedComma(&s);
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->submitters, ret->submitterCount);
-for (i=0; i<ret->submitterCount; ++i)
-    {
-    ret->submitters[i] = sqlStringComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-ret->alleleFreqCount = sqlSignedComma(&s);
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->alleles, ret->alleleFreqCount);
-for (i=0; i<ret->alleleFreqCount; ++i)
-    {
-    ret->alleles[i] = sqlStringComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->alleleNs, ret->alleleFreqCount);
-for (i=0; i<ret->alleleFreqCount; ++i)
-    {
-    ret->alleleNs[i] = sqlFloatComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->alleleFreqs, ret->alleleFreqCount);
-for (i=0; i<ret->alleleFreqCount; ++i)
-    {
-    ret->alleleFreqs[i] = sqlFloatComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-ret->bitfields = sqlStringComma(&s);
-*pS = s;
-return ret;
-}
-
-void snp132ExtFree(struct snp132Ext **pEl)
-/* Free a single dynamically allocated snp132Ext such as created
- * with snp132ExtLoad(). */
-{
-struct snp132Ext *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->chrom);
-freeMem(el->name);
-freeMem(el->strand);
-freeMem(el->refNCBI);
-freeMem(el->refUCSC);
-freeMem(el->observed);
-freeMem(el->molType);
-freeMem(el->class);
-freeMem(el->valid);
-freeMem(el->func);
-freeMem(el->locType);
-freeMem(el->exceptions);
-/* All strings in submitters are allocated at once, so only need to free first. */
-if (el->submitters != NULL)
-    freeMem(el->submitters[0]);
-freeMem(el->submitters);
-/* All strings in alleles are allocated at once, so only need to free first. */
-if (el->alleles != NULL)
-    freeMem(el->alleles[0]);
-freeMem(el->alleles);
-freeMem(el->alleleNs);
-freeMem(el->alleleFreqs);
-freeMem(el->bitfields);
-freez(pEl);
-}
-
-void snp132ExtFreeList(struct snp132Ext **pList)
-/* Free a list of dynamically allocated snp132Ext's */
-{
-struct snp132Ext *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    snp132ExtFree(&el);
-    }
-*pList = NULL;
-}
-
-void snp132ExtOutput(struct snp132Ext *el, FILE *f, char sep, char lastSep) 
-/* Print out snp132Ext.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chromStart);
-fputc(sep,f);
-fprintf(f, "%u", el->chromEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->score);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->strand);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->refNCBI);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->refUCSC);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->observed);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->molType);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->class);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->valid);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%g", el->avHet);
-fputc(sep,f);
-fprintf(f, "%g", el->avHetSE);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->func);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->locType);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->weight);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->exceptions);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%d", el->submitterCount);
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->submitterCount; ++i)
-    {
-    if (sep == ',') fputc('"',f);
-    fprintf(f, "%s", el->submitters[i]);
-    if (sep == ',') fputc('"',f);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-fprintf(f, "%d", el->alleleFreqCount);
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->alleleFreqCount; ++i)
-    {
-    if (sep == ',') fputc('"',f);
-    fprintf(f, "%s", el->alleles[i]);
-    if (sep == ',') fputc('"',f);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->alleleFreqCount; ++i)
-    {
-    fprintf(f, "%g", el->alleleNs[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->alleleFreqCount; ++i)
-    {
-    fprintf(f, "%g", el->alleleFreqs[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->bitfields);
-if (sep == ',') fputc('"',f);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-