533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/snpUi.c src/hg/lib/snpUi.c
deleted file mode 100644
index 534830d..0000000
--- src/hg/lib/snpUi.c
+++ /dev/null
@@ -1,475 +0,0 @@
-/* snpUi.c - char arrays for snp UI features */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-#include "snpUi.h"
-#include "common.h"
-
-/****** Some stuff for snp colors *******/
-
-char *snpColorLabel[] = {
-    "red",
-    "green",
-    "blue",
-    "black",
-    "exclude",
-};
-
-int snpColorLabelSize = ArraySize(snpColorLabel);
-
-/****** Some stuff for snpMapSource related controls *******/
-/* dbSnp, Affy10K, Affy10Kv2, Affy50K_HindIII, Affy50K_XbaI */
-
-char *snpMapSourceLabels[] = {
-    "Bac Overlaps",
-    "Random",
-    "Mixed",
-    "Other",
-    "Affymetrix Genotyping Array 10K",
-    "Affymetrix Genotyping Array 120K",
-};
-char *snpMapSourceStrings[] = {
-    "snpMapSourceBacOverlap",
-    "snpMapSourceRandom",
-    "snpMapSourceMixed",
-    "snpMapSourceOther",
-    "snpMapSourceAffy10K",
-    "snpMapSourceAffy120K",
-};
-char *snpMapSourceDataName[] = {
-    "BAC_OVERLAP",
-    "RANDOM",
-    "MIXED",
-    "OTHER",
-    "Affy10K",
-    "Affy120K",
-};
-char *snpMapSourceDefault[] = {
-    "black",
-    "blue",
-    "red",
-    "red",
-    "green",
-    "green",
-};
-char *snpMapSourceCart[] = {
-    "black",
-    "blue",
-    "red",
-    "red",
-    "green",
-    "green",
-};
-
-int snpMapSourceLabelsSize   = ArraySize(snpMapSourceLabels);
-int snpMapSourceStringsSize  = ArraySize(snpMapSourceStrings);
-int snpMapSourceDataNameSize = ArraySize(snpMapSourceDataName);
-int snpMapSourceDefaultSize  = ArraySize(snpMapSourceDefault);
-int snpMapSourceCartSize     = ArraySize(snpMapSourceCart);
-
-/****** Some stuff for snpMapType related controls *******/
-/* SingleNP, indel, segnemtal */
-
-char *snpMapTypeLabel[] = {
-    "include",
-    "exclude",
-};
-char *snpMapTypeLabels[] = {
-    "Single Nucleotide Polymorphisms",
-    "Insertions and Deletions",
-    "Segmental Duplications",
-};
-char *snpMapTypeStrings[] = {
-    "snpMapTypeSingle",
-    "snpMapTypeIndels",
-    "snpMapTypeSegmental",
-};
-char *snpMapTypeDataName[] = {
-    "SNP",
-    "INDEL",
-    "SEGMENTAL",
-};
-char *snpMapTypeDefault[] = {
-    "include",
-    "include",
-    "include",
-};
-char *snpMapTypeCart[] = {
-    "include",
-    "include",
-    "include",
-};
-
-int snpMapTypeLabelSize    = ArraySize(snpMapTypeLabel);
-int snpMapTypeLabelsSize   = ArraySize(snpMapTypeLabels);
-int snpMapTypeStringsSize  = ArraySize(snpMapTypeStrings);
-int snpMapTypeDataNameSize = ArraySize(snpMapTypeDataName);
-int snpMapTypeDefaultSize  = ArraySize(snpMapTypeDefault);
-int snpMapTypeCartSize     = ArraySize(snpMapTypeCart);
-
-/****** Some stuff for snpColorSource related controls *******/
-/* Source, Molecule Type, Class, Validation, Function */
-
-char *snpColorSourceLabels[] = {
-    "Source",
-    "Molecule Type",
-    "Variant Class",
-    "Validation Status",
-    "Functional Class",
-    "Location Type",
-    "Black",
-};
-
-char *snpColorSourceStrings[] = {
-    "snpColorSourceSource",
-    "snpColorSourceMolType",
-    "snpColorSourceClass",
-    "snpColorSourceValid",
-    "snpColorSourceFunc",
-    "snpColorSourceLocType",
-    "snpColorSourceBlack",
-};
-char *snpColorSourceDataName[] = {
-    "snpColorSource",
-};
-char *snpColorSourceDefault[] = {
-    "snpColorSourceFunc",
-};
-char *snpColorSourceCart[] = {
-    "snpColorSourceFunc",
-};
-
-int snpColorSourceLabelsSize   = ArraySize(snpColorSourceLabels);
-int snpColorSourceStringsSize  = ArraySize(snpColorSourceStrings);
-int snpColorSourceDataNameSize = ArraySize(snpColorSourceDataName);
-int snpColorSourceDefaultSize  = ArraySize(snpColorSourceDefault);
-int snpColorSourceCartSize     = ArraySize(snpColorSourceCart);
-
-/****** Some stuff for snpSource related controls *******/
-/* dbSnp, Affy10K, Affy10Kv2, Affy50K_HindIII, Affy50K_XbaI */
-
-char *snpSourceLabels[] = {
-    "dbSnp",
-    "Affymetrix Genotyping Array 10K",
-    "Affymetrix Genotyping Array 10K v2",
-    "Affymetrix Genotyping Array 50K HindIII",
-    "Affymetrix Genotyping Array 50K XbaI",
-};
-char *snpSourceStrings[] = {
-    "snpSourceDbSnp",
-    "snpSourceAffy10K",
-    "snpSourceAffy10Kv2",
-    "snpSourceAffy50KHindIII",
-    "snpSourceAffy50KXbaI",
-};
-char *snpSourceDataName[] = {
-    "dbSnp",
-    "Affy10K",
-    "Affy10Kv2",
-    "Affy50K_HindIII",
-    "Affy50K_XbaI",
-};
-char *snpSourceDefault[] = {
-    "black",
-    "blue",
-    "red",
-    "green",
-    "green",
-};
-char *snpSourceCart[] = {
-    "black",
-    "blue",
-    "red",
-    "green",
-    "green",
-};
-
-int snpSourceLabelsSize   = ArraySize(snpSourceLabels);
-int snpSourceStringsSize  = ArraySize(snpSourceStrings);
-int snpSourceDataNameSize = ArraySize(snpSourceDataName);
-int snpSourceDefaultSize  = ArraySize(snpSourceDefault);
-int snpSourceCartSize     = ArraySize(snpSourceCart);
-
-/****** Some stuff for snpMolType related controls *******/
-/* unknown, genomic, cDNA, mito, chloro */
-
-char *snpMolTypeLabels[] = {
-    "Unknown",
-    "Genomic",
-    "cDNA",
-    "Mitochondrial",
-    "Chloroplast",
-};
-char *snpMolTypeStrings[] = {
-    "snpMolTypeUnknown",
-    "snpMolTypeGenomic",
-    "snpMolTypecDNA",
-    "snpMolTypeMito",
-    "snpMolTypeChloro",
-};
-char *snpMolTypeDataName[] = {
-    "unknown",
-    "genomic",
-    "cDNA",
-    "mito",
-    "chloro",
-};
-char *snpMolTypeDefault[] = {
-    "red",
-    "black",
-    "blue",
-    "green",
-    "exclude",
-};
-char *snpMolTypeCart[] = {
-    "red",
-    "black",
-    "blue",
-    "green",
-    "exclude",
-};
-
-int snpMolTypeLabelsSize   = ArraySize(snpMolTypeLabels);
-int snpMolTypeStringsSize  = ArraySize(snpMolTypeStrings);
-int snpMolTypeDataNameSize = ArraySize(snpMolTypeDataName);
-int snpMolTypeDefaultSize  = ArraySize(snpMolTypeDefault);
-int snpMolTypeCartSize     = ArraySize(snpMolTypeCart);
-
-/****** Some stuff for snpClass related controls *******/
-/* unknown, snp, in-del, het, microsat, named, no-variation, mixed,
- * mnp */
-
-char *snpClassLabels[] = {
-    "Unknown",
-    "Single Nucleotide Polymorphism",
-    "Insertion / Deletion",
-    "Heterozygous",
-    "Microsatellite",
-    "Named",
-    "No Variation",
-    "Mixed",
-    "Multiple Nucleotide Polymorphism",
-};
-char *snpClassStrings[] = {
-    "snpClassUnknown",
-    "snpClassSnp",
-    "snpClassInDel",
-    "snpClassHet",
-    "snpClassMicrosat",
-    "snpClassNamed",
-    "snpClassNoVariation",
-    "snpClassMixed",
-    "snpClassMnp",
-};
-char *snpClassDataName[] = {
-    "unknown",
-    "snp",
-    "in-del",
-    "het",
-    "microsat",
-    "named",
-    "no-variation",
-    "mixed",
-    "mnp",
-};
-char *snpClassDefault[] = {
-    "red",
-    "black",
-    "blue",
-    "red",
-    "green",
-    "green",
-    "red",
-    "black",
-    "blue",
-};
-char *snpClassCart[] = {
-    "red",
-    "black",
-    "blue",
-    "red",
-    "green",
-    "green",
-    "red",
-    "black",
-    "blue",
-};
-
-int snpClassLabelsSize   = ArraySize(snpClassLabels);
-int snpClassStringsSize  = ArraySize(snpClassStrings);
-int snpClassDataNameSize = ArraySize(snpClassDataName);
-int snpClassDefaultSize  = ArraySize(snpClassDefault);
-int snpClassCartSize     = ArraySize(snpClassCart);
-
-/****** Some stuff for snpValid related controls *******/
-/* unknown, other-pop, by-frequency, by-cluster, by-2hit-2allele,
- * by-hapmap, genotype */
-
-char *snpValidLabels[] = {
-    "Unknown",
-    "Other Population",
-    "By Frequency",
-    "By Cluster",
-    "By 2 Hit / 2 Allele",
-    "By HapMap",
-    "By Genotype",
-};
-char *snpValidStrings[] = {
-    "snpValidUnknown",
-    "snpValidOtherPop",
-    "snpValidFrequency",
-    "snpValidCluster",
-    "snpValid2H2A",
-    "snpValidHapMap",
-    "snpValidGenotype",
-};
-char *snpValidDataName[] = {
-    "unknown",
-    "other-pop",
-    "by-frequency",
-    "by-cluster",
-    "by-2hit-2allele",
-    "by-hapmap",
-    "genotype",
-};
-char *snpValidDefault[] = {
-    "red",
-    "black",
-    "black",
-    "black",
-    "black",
-    "blue",
-    "green",
-};
-char *snpValidCart[] = {
-    "red",
-    "black",
-    "black",
-    "black",
-    "black",
-    "blue",
-    "green",
-};
-
-int snpValidLabelsSize   = ArraySize(snpValidLabels);
-int snpValidStringsSize  = ArraySize(snpValidStrings);
-int snpValidDataNameSize = ArraySize(snpValidDataName);
-int snpValidDefaultSize  = ArraySize(snpValidDefault);
-int snpValidCartSize     = ArraySize(snpValidCart);
-
-/****** Some stuff for snpFunc related controls *******/
-/* unknown, locus-region, coding, coding-synon, coding-nonsynon,
- * mrna-utr, intron, splice-site, reference, exception */
-
-char *snpFuncLabels[] = {
-    "Unknown",
-    "Locus Region",
-    "Coding",
-    "Coding - Synonymous",
-    "Coding - Non-Synonymous",
-    "mRNA/UTR",
-    "Intron",
-    "Splice site",
-    "Reference",
-    "Exception",
-};
-char *snpFuncStrings[] = {
-    "snpFuncUnknown",
-    "snpFuncLocus",
-    "snpFuncCoding",
-    "snpFuncSynon",
-    "snpFuncNonSynon",
-    "snpFuncmRnaUtr",
-    "snpFuncIntron",
-    "snpFuncSplice",
-    "snpFuncReference",
-    "snpFuncException",
-};
-char *snpFuncDataName[] = {
-    "unknown",
-    "locus-region",
-    "coding",
-    "coding-synon",
-    "coding-nonsynon",
-    "mrna-utr",
-    "intron",
-    "splice-site",
-    "reference",
-    "exception",
-};
-char *snpFuncDefault[] = {
-    "black",
-    "black",
-    "blue",
-    "green",
-    "red",
-    "blue",
-    "blue",
-    "red",
-    "black",
-    "black",
-};
-char *snpFuncCart[] = {
-    "black",
-    "black",
-    "blue",
-    "green",
-    "red",
-    "blue",
-    "blue",
-    "red",
-    "black",
-    "black",
-};
-
-int snpFuncLabelsSize   = ArraySize(snpFuncLabels);
-int snpFuncStringsSize  = ArraySize(snpFuncStrings);
-int snpFuncDataNameSize = ArraySize(snpFuncDataName);
-int snpFuncDefaultSize  = ArraySize(snpFuncDefault);
-int snpFuncCartSize     = ArraySize(snpFuncCart);
-
-/****** Some stuff for snpLocType related controls *******/
-/* unknown, range, exact, between */
-
-char *snpLocTypeLabels[] = {
-    "Unknown",
-    "Range",
-    "Exact",
-    "Between",
-};
-char *snpLocTypeStrings[] = {
-    "snpLocTypeUnknown",
-    "snpLocTypeRange",
-    "snpLocTypeExact",
-    "snpLocTypeBetween",
-};
-char *snpLocTypeDataName[] = {
-    "unknown",
-    "range",
-    "exact",
-    "between",
-};
-char *snpLocTypeDefault[] = {
-    "red",
-    "green",
-    "blue",
-    "black",
-};
-char *snpLocTypeCart[] = {
-    "red",
-    "green",
-    "blue",
-    "black",
-};
-
-int snpLocTypeLabelsSize   = ArraySize(snpLocTypeLabels);
-int snpLocTypeStringsSize  = ArraySize(snpLocTypeStrings);
-int snpLocTypeDataNameSize = ArraySize(snpLocTypeDataName);
-int snpLocTypeDefaultSize  = ArraySize(snpLocTypeDefault);
-int snpLocTypeCartSize     = ArraySize(snpLocTypeCart);
-
-/****** Some stuff for snpLocType related controls *******/
-/* minimum Average Heterozygosity cutoff  */
-
-float snpAvHetCutoff = 0.0;
-