533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/softPromoter.c src/hg/lib/softPromoter.c deleted file mode 100644 index 5542c69..0000000 --- src/hg/lib/softPromoter.c +++ /dev/null @@ -1,149 +0,0 @@ -/* softPromoter.c was originally generated by the autoSql program, which also - * generated softPromoter.h and softPromoter.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "jksql.h" -#include "softPromoter.h" - - -void softPromoterStaticLoad(char **row, struct softPromoter *ret) -/* Load a row from softPromoter table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -ret->chrom = row[0]; -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->name = row[3]; -ret->score = sqlUnsigned(row[4]); -ret->type = row[5]; -ret->origScore = atof(row[6]); -ret->origName = row[7]; -ret->blockString = row[8]; -} - -struct softPromoter *softPromoterLoad(char **row) -/* Load a softPromoter from row fetched with select * from softPromoter - * from database. Dispose of this with softPromoterFree(). */ -{ -struct softPromoter *ret; - -AllocVar(ret); -ret->chrom = cloneString(row[0]); -ret->chromStart = sqlUnsigned(row[1]); -ret->chromEnd = sqlUnsigned(row[2]); -ret->name = cloneString(row[3]); -ret->score = sqlUnsigned(row[4]); -ret->type = cloneString(row[5]); -ret->origScore = atof(row[6]); -ret->origName = cloneString(row[7]); -ret->blockString = cloneString(row[8]); -return ret; -} - -struct softPromoter *softPromoterLoadAll(char *fileName) -/* Load all softPromoter from a tab-separated file. - * Dispose of this with softPromoterFreeList(). */ -{ -struct softPromoter *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[9]; - -while (lineFileRow(lf, row)) - { - el = softPromoterLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct softPromoter *softPromoterCommaIn(char **pS, struct softPromoter *ret) -/* Create a softPromoter out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new softPromoter */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->chrom = sqlStringComma(&s); -ret->chromStart = sqlUnsignedComma(&s); -ret->chromEnd = sqlUnsignedComma(&s); -ret->name = sqlStringComma(&s); -ret->score = sqlUnsignedComma(&s); -ret->type = sqlStringComma(&s); -ret->origScore = sqlSignedComma(&s); -ret->origName = sqlStringComma(&s); -ret->blockString = sqlStringComma(&s); -*pS = s; -return ret; -} - -void softPromoterFree(struct softPromoter **pEl) -/* Free a single dynamically allocated softPromoter such as created - * with softPromoterLoad(). */ -{ -struct softPromoter *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->chrom); -freeMem(el->name); -freeMem(el->type); -freeMem(el->origName); -freeMem(el->blockString); -freez(pEl); -} - -void softPromoterFreeList(struct softPromoter **pList) -/* Free a list of dynamically allocated softPromoter's */ -{ -struct softPromoter *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - softPromoterFree(&el); - } -*pList = NULL; -} - -void softPromoterOutput(struct softPromoter *el, FILE *f, char sep, char lastSep) -/* Print out softPromoter. Separate fields with sep. Follow last field with lastSep. */ -{ -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->chrom); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->chromStart); -fputc(sep,f); -fprintf(f, "%u", el->chromEnd); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->name); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->score); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->type); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%f", el->origScore); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->origName); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->blockString); -if (sep == ',') fputc('"',f); -fputc(lastSep,f); -} -