533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/stsInfoMouse.c src/hg/lib/stsInfoMouse.c deleted file mode 100644 index ed19a1b..0000000 --- src/hg/lib/stsInfoMouse.c +++ /dev/null @@ -1,217 +0,0 @@ -/* stsInfoMouse.c was originally generated by the autoSql program, which also - * generated stsInfoMouse.h and stsInfoMouse.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "stsInfoMouse.h" - - -void stsInfoMouseStaticLoad(char **row, struct stsInfoMouse *ret) -/* Load a row from stsInfoMouse table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -ret->identNo = sqlUnsigned(row[0]); -ret->name = row[1]; -ret->MGIPrimerID = sqlUnsigned(row[2]); -ret->primerName = row[3]; -ret->primerSymbol = row[4]; -ret->primer1 = row[5]; -ret->primer2 = row[6]; -ret->distance = row[7]; -ret->sequence = sqlUnsigned(row[8]); -ret->MGIMarkerID = sqlUnsigned(row[9]); -ret->stsMarkerSymbol = row[10]; -ret->Chr = row[11]; -ret->geneticPos = atof(row[12]); -ret->stsMarkerName = row[13]; -ret->LocusLinkID = sqlUnsigned(row[14]); -} - -struct stsInfoMouse *stsInfoMouseLoad(char **row) -/* Load a stsInfoMouse from row fetched with select * from stsInfoMouse - * from database. Dispose of this with stsInfoMouseFree(). */ -{ -struct stsInfoMouse *ret; - -AllocVar(ret); -ret->identNo = sqlUnsigned(row[0]); -ret->name = cloneString(row[1]); -ret->MGIPrimerID = sqlUnsigned(row[2]); -ret->primerName = cloneString(row[3]); -ret->primerSymbol = cloneString(row[4]); -ret->primer1 = cloneString(row[5]); -ret->primer2 = cloneString(row[6]); -ret->distance = cloneString(row[7]); -ret->sequence = sqlUnsigned(row[8]); -ret->MGIMarkerID = sqlUnsigned(row[9]); -ret->stsMarkerSymbol = cloneString(row[10]); -ret->Chr = cloneString(row[11]); -ret->geneticPos = atof(row[12]); -ret->stsMarkerName = cloneString(row[13]); -ret->LocusLinkID = sqlUnsigned(row[14]); -return ret; -} - -struct stsInfoMouse *stsInfoMouseLoadAll(char *fileName) -/* Load all stsInfoMouse from a tab-separated file. - * Dispose of this with stsInfoMouseFreeList(). */ -{ -struct stsInfoMouse *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[15]; - -while (lineFileRow(lf, row)) - { - el = stsInfoMouseLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct stsInfoMouse *stsInfoMouseLoadWhere(struct sqlConnection *conn, char *table, char *where) -/* Load all stsInfoMouse from table that satisfy where clause. The - * where clause may be NULL in which case whole table is loaded - * Dispose of this with stsInfoMouseFreeList(). */ -{ -struct stsInfoMouse *list = NULL, *el; -struct dyString *query = dyStringNew(256); -struct sqlResult *sr; -char **row; - -sqlDyStringPrintf(query, "select * from %s", table); -if (where != NULL) - dyStringPrintf(query, " where %s", where); -sr = sqlGetResult(conn, query->string); -while ((row = sqlNextRow(sr)) != NULL) - { - el = stsInfoMouseLoad(row); - slAddHead(&list, el); - } -slReverse(&list); -sqlFreeResult(&sr); -dyStringFree(&query); -return list; -} - -struct stsInfoMouse *stsInfoMouseCommaIn(char **pS, struct stsInfoMouse *ret) -/* Create a stsInfoMouse out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new stsInfoMouse */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->identNo = sqlUnsignedComma(&s); -ret->name = sqlStringComma(&s); -ret->MGIPrimerID = sqlUnsignedComma(&s); -ret->primerName = sqlStringComma(&s); -ret->primerSymbol = sqlStringComma(&s); -ret->primer1 = sqlStringComma(&s); -ret->primer2 = sqlStringComma(&s); -ret->distance = sqlStringComma(&s); -ret->sequence = sqlUnsignedComma(&s); -ret->MGIMarkerID = sqlUnsignedComma(&s); -ret->stsMarkerSymbol = sqlStringComma(&s); -ret->Chr = sqlStringComma(&s); -ret->geneticPos = sqlFloatComma(&s); -ret->stsMarkerName = sqlStringComma(&s); -ret->LocusLinkID = sqlUnsignedComma(&s); -*pS = s; -return ret; -} - -void stsInfoMouseFree(struct stsInfoMouse **pEl) -/* Free a single dynamically allocated stsInfoMouse such as created - * with stsInfoMouseLoad(). */ -{ -struct stsInfoMouse *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->name); -freeMem(el->primerName); -freeMem(el->primerSymbol); -freeMem(el->primer1); -freeMem(el->primer2); -freeMem(el->distance); -freeMem(el->stsMarkerSymbol); -freeMem(el->Chr); -freeMem(el->stsMarkerName); -freez(pEl); -} - -void stsInfoMouseFreeList(struct stsInfoMouse **pList) -/* Free a list of dynamically allocated stsInfoMouse's */ -{ -struct stsInfoMouse *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - stsInfoMouseFree(&el); - } -*pList = NULL; -} - -void stsInfoMouseOutput(struct stsInfoMouse *el, FILE *f, char sep, char lastSep) -/* Print out stsInfoMouse. Separate fields with sep. Follow last field with lastSep. */ -{ -fprintf(f, "%u", el->identNo); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->name); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->MGIPrimerID); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->primerName); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->primerSymbol); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->primer1); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->primer2); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->distance); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->sequence); -fputc(sep,f); -fprintf(f, "%u", el->MGIMarkerID); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->stsMarkerSymbol); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->Chr); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%f", el->geneticPos); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->stsMarkerName); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->LocusLinkID); -fputc(lastSep,f); -} -