533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/stsInfoMouseNew.c src/hg/lib/stsInfoMouseNew.c deleted file mode 100644 index 5ee2f21..0000000 --- src/hg/lib/stsInfoMouseNew.c +++ /dev/null @@ -1,283 +0,0 @@ -/* stsInfoMouseNew.c was originally generated by the autoSql program, which also - * generated stsInfoMouseNew.h and stsInfoMouseNew.sql. This module links the database and - * the RAM representation of objects. */ - -/* Copyright (C) 2014 The Regents of the University of California - * See README in this or parent directory for licensing information. */ - -#include "common.h" -#include "linefile.h" -#include "dystring.h" -#include "jksql.h" -#include "stsInfoMouseNew.h" - - -void stsInfoMouseNewStaticLoad(char **row, struct stsInfoMouseNew *ret) -/* Load a row from stsInfoMouseNew table into ret. The contents of ret will - * be replaced at the next call to this function. */ -{ - -ret->identNo = sqlUnsigned(row[0]); -ret->name = row[1]; -ret->MGIId = sqlUnsigned(row[2]); -ret->MGIName = row[3]; -ret->UiStsId = sqlUnsigned(row[4]); -ret->nameCount = sqlUnsigned(row[5]); -ret->alias = row[6]; -ret->primer1 = row[7]; -ret->primer2 = row[8]; -ret->distance = row[9]; -ret->sequence = sqlUnsigned(row[10]); -ret->organis = row[11]; -ret->wigName = row[12]; -ret->wigChr = row[13]; -ret->wigGeneticPos = atof(row[14]); -ret->mgiName = row[15]; -ret->mgiChr = row[16]; -ret->mgiGeneticPos = atof(row[17]); -ret->rhName = row[18]; -ret->rhChr = row[19]; -ret->rhGeneticPos = atof(row[20]); -ret->RHLOD = atof(row[21]); -ret->GeneName = row[22]; -ret->GeneID = row[23]; -ret->clone = row[24]; -} - -struct stsInfoMouseNew *stsInfoMouseNewLoad(char **row) -/* Load a stsInfoMouseNew from row fetched with select * from stsInfoMouseNew - * from database. Dispose of this with stsInfoMouseNewFree(). */ -{ -struct stsInfoMouseNew *ret; - -AllocVar(ret); -ret->identNo = sqlUnsigned(row[0]); -ret->name = cloneString(row[1]); -ret->MGIId = sqlUnsigned(row[2]); -ret->MGIName = cloneString(row[3]); -ret->UiStsId = sqlUnsigned(row[4]); -ret->nameCount = sqlUnsigned(row[5]); -ret->alias = cloneString(row[6]); -ret->primer1 = cloneString(row[7]); -ret->primer2 = cloneString(row[8]); -ret->distance = cloneString(row[9]); -ret->sequence = sqlUnsigned(row[10]); -ret->organis = cloneString(row[11]); -ret->wigName = cloneString(row[12]); -ret->wigChr = cloneString(row[13]); -ret->wigGeneticPos = atof(row[14]); -ret->mgiName = cloneString(row[15]); -ret->mgiChr = cloneString(row[16]); -ret->mgiGeneticPos = atof(row[17]); -ret->rhName = cloneString(row[18]); -ret->rhChr = cloneString(row[19]); -ret->rhGeneticPos = atof(row[20]); -ret->RHLOD = atof(row[21]); -ret->GeneName = cloneString(row[22]); -ret->GeneID = cloneString(row[23]); -ret->clone = cloneString(row[24]); -return ret; -} - -struct stsInfoMouseNew *stsInfoMouseNewLoadAll(char *fileName) -/* Load all stsInfoMouseNew from a whitespace-separated file. - * Dispose of this with stsInfoMouseNewFreeList(). */ -{ -struct stsInfoMouseNew *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[25]; - -while (lineFileRow(lf, row)) - { - el = stsInfoMouseNewLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct stsInfoMouseNew *stsInfoMouseNewLoadAllByChar(char *fileName, char chopper) -/* Load all stsInfoMouseNew from a chopper separated file. - * Dispose of this with stsInfoMouseNewFreeList(). */ -{ -struct stsInfoMouseNew *list = NULL, *el; -struct lineFile *lf = lineFileOpen(fileName, TRUE); -char *row[25]; - -while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) - { - el = stsInfoMouseNewLoad(row); - slAddHead(&list, el); - } -lineFileClose(&lf); -slReverse(&list); -return list; -} - -struct stsInfoMouseNew *stsInfoMouseNewCommaIn(char **pS, struct stsInfoMouseNew *ret) -/* Create a stsInfoMouseNew out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new stsInfoMouseNew */ -{ -char *s = *pS; - -if (ret == NULL) - AllocVar(ret); -ret->identNo = sqlUnsignedComma(&s); -ret->name = sqlStringComma(&s); -ret->MGIId = sqlUnsignedComma(&s); -ret->MGIName = sqlStringComma(&s); -ret->UiStsId = sqlUnsignedComma(&s); -ret->nameCount = sqlUnsignedComma(&s); -ret->alias = sqlStringComma(&s); -ret->primer1 = sqlStringComma(&s); -ret->primer2 = sqlStringComma(&s); -ret->distance = sqlStringComma(&s); -ret->sequence = sqlUnsignedComma(&s); -ret->organis = sqlStringComma(&s); -ret->wigName = sqlStringComma(&s); -ret->wigChr = sqlStringComma(&s); -ret->wigGeneticPos = sqlFloatComma(&s); -ret->mgiName = sqlStringComma(&s); -ret->mgiChr = sqlStringComma(&s); -ret->mgiGeneticPos = sqlFloatComma(&s); -ret->rhName = sqlStringComma(&s); -ret->rhChr = sqlStringComma(&s); -ret->rhGeneticPos = sqlFloatComma(&s); -ret->RHLOD = sqlFloatComma(&s); -ret->GeneName = sqlStringComma(&s); -ret->GeneID = sqlStringComma(&s); -ret->clone = sqlStringComma(&s); -*pS = s; -return ret; -} - -void stsInfoMouseNewFree(struct stsInfoMouseNew **pEl) -/* Free a single dynamically allocated stsInfoMouseNew such as created - * with stsInfoMouseNewLoad(). */ -{ -struct stsInfoMouseNew *el; - -if ((el = *pEl) == NULL) return; -freeMem(el->name); -freeMem(el->MGIName); -freeMem(el->alias); -freeMem(el->primer1); -freeMem(el->primer2); -freeMem(el->distance); -freeMem(el->organis); -freeMem(el->wigName); -freeMem(el->wigChr); -freeMem(el->mgiName); -freeMem(el->mgiChr); -freeMem(el->rhName); -freeMem(el->rhChr); -freeMem(el->GeneName); -freeMem(el->GeneID); -freeMem(el->clone); -freez(pEl); -} - -void stsInfoMouseNewFreeList(struct stsInfoMouseNew **pList) -/* Free a list of dynamically allocated stsInfoMouseNew's */ -{ -struct stsInfoMouseNew *el, *next; - -for (el = *pList; el != NULL; el = next) - { - next = el->next; - stsInfoMouseNewFree(&el); - } -*pList = NULL; -} - -void stsInfoMouseNewOutput(struct stsInfoMouseNew *el, FILE *f, char sep, char lastSep) -/* Print out stsInfoMouseNew. Separate fields with sep. Follow last field with lastSep. */ -{ -fprintf(f, "%u", el->identNo); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->name); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->MGIId); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->MGIName); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->UiStsId); -fputc(sep,f); -fprintf(f, "%u", el->nameCount); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->alias); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->primer1); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->primer2); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->distance); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%u", el->sequence); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->organis); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->wigName); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->wigChr); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%f", el->wigGeneticPos); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->mgiName); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->mgiChr); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%f", el->mgiGeneticPos); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->rhName); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->rhChr); -if (sep == ',') fputc('"',f); -fputc(sep,f); -fprintf(f, "%f", el->rhGeneticPos); -fputc(sep,f); -fprintf(f, "%f", el->RHLOD); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->GeneName); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->GeneID); -if (sep == ',') fputc('"',f); -fputc(sep,f); -if (sep == ',') fputc('"',f); -fprintf(f, "%s", el->clone); -if (sep == ',') fputc('"',f); -fputc(lastSep,f); -} - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ -