533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/lib/tests/annoGratorTests.mk src/hg/lib/tests/annoGratorTests.mk deleted file mode 100644 index 23f82f0..0000000 --- src/hg/lib/tests/annoGratorTests.mk +++ /dev/null @@ -1,73 +0,0 @@ -# makefile with annoGrator tests -include ../../../inc/common.mk - -BIN_DIR = bin/$(MACHTYPE) -TESTER = ${BIN_DIR}/annoGratorTester -IN_DIR = input/annoGrator -EXP_DIR = expected/annoGrator -OUT_DIR = output/annoGrator -DB=hg19 - -test: pgSnpDbToTabOut pgSnpKgDbToTabOutShort pgSnpKgDbToGpFx snpConsDbToTabOutShort vcfEx1 vcfEx2 \ - bigBedToTabOut snpBigWigToTabOut vepOut vepOutIndelTrim gpFx insertions - -pgSnpDbToTabOut: mkout - ${TESTER} ${DB} $@ > ${OUT_DIR}/$@.txt - diff -u ${EXP_DIR}/$@.txt ${OUT_DIR}/$@.txt - -pgSnpKgDbToTabOutShort: mkout - ${TESTER} ${DB} $@ > ${OUT_DIR}/$@.txt - diff -u ${EXP_DIR}/$@.txt ${OUT_DIR}/$@.txt - -pgSnpKgDbToGpFx: mkout - ${TESTER} ${DB} $@ > ${OUT_DIR}/$@.txt - diff -u ${EXP_DIR}/$@.txt ${OUT_DIR}/$@.txt - -snpConsDbToTabOutShort: mkout - ${TESTER} ${DB} $@ > ${OUT_DIR}/$@.txt - diff -u ${EXP_DIR}/$@.txt ${OUT_DIR}/$@.txt - -vcfEx1: mkout - ${TESTER} ${DB} $@ > ${OUT_DIR}/$@.txt - diff -u ${EXP_DIR}/$@.txt ${OUT_DIR}/$@.txt - -vcfEx2: mkout - ${TESTER} ${DB} $@ > ${OUT_DIR}/$@.txt - diff -u ${EXP_DIR}/$@.txt ${OUT_DIR}/$@.txt - -bigBedToTabOut: mkout - ${TESTER} ${DB} $@ > ${OUT_DIR}/$@.txt - diff -u ${EXP_DIR}/$@.txt ${OUT_DIR}/$@.txt - -snpBigWigToTabOut: mkout - ${TESTER} ${DB} $@ > ${OUT_DIR}/$@.txt - diff -u ${EXP_DIR}/$@.txt ${OUT_DIR}/$@.txt - -vepOut: mkout - ${TESTER} ${DB} $@ | grep -v 'Output produced at' > ${OUT_DIR}/$@.txt - diff -u ${EXP_DIR}/$@.txt ${OUT_DIR}/$@.txt - -vepOutIndelTrim: mkout - ${TESTER} ${DB} $@ | grep -v 'Output produced at' > ${OUT_DIR}/$@.txt - diff -u ${EXP_DIR}/$@.txt ${OUT_DIR}/$@.txt - -gpFx: mkout - ${TESTER} ${DB} $@ | grep -v 'Output produced at' > ${OUT_DIR}/$@.txt - diff -u ${EXP_DIR}/$@.txt ${OUT_DIR}/$@.txt - -insertions: mkout - hgsql test -e 'drop table if exists chromInfo; \ - create table chromInfo select * from hg19.chromInfo;' - hgLoadBed -verbose=0 -allowStartEqualEnd \ - test insertionsPrimary input/annoGrator/insertionsPrimary.bed - hgLoadBed -verbose=0 -allowStartEqualEnd \ - test insertionsSecondary input/annoGrator/insertionsSecondary.bed - ${TESTER} ${DB} $@ > ${OUT_DIR}/$@.txt - diff -u ${EXP_DIR}/$@.txt ${OUT_DIR}/$@.txt - hgsql test -e 'drop table chromInfo; \ - drop table insertionsPrimary; \ - drop table insertionsSecondary;' - rm -f bed.tab - -mkout: - @${MKDIR} ${OUT_DIR}