533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/trackTable.c src/hg/lib/trackTable.c
deleted file mode 100644
index f0174c8..0000000
--- src/hg/lib/trackTable.c
+++ /dev/null
@@ -1,409 +0,0 @@
-/* trackTable.c was originally generated by the autoSql program, which also 
- * generated trackTable.h and trackTable.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "jksql.h"
-#include "trackTable.h"
-#include "hdb.h"
-
-
-void trackTableStaticLoad(char **row, struct trackTable *ret)
-/* Load a row from trackTable table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->mapName = row[0];
-ret->tableName = row[1];
-ret->shortLabel = row[2];
-ret->longLabel = row[3];
-ret->visibility = sqlUnsigned(row[4]);
-ret->colorR = sqlUnsigned(row[5]);
-ret->colorG = sqlUnsigned(row[6]);
-ret->colorB = sqlUnsigned(row[7]);
-ret->altColorR = sqlUnsigned(row[8]);
-ret->altColorG = sqlUnsigned(row[9]);
-ret->altColorB = sqlUnsigned(row[10]);
-ret->useScore = sqlUnsigned(row[11]);
-ret->isSplit = sqlUnsigned(row[12]);
-ret->private = sqlUnsigned(row[13]);
-}
-
-struct trackTable *trackTableLoad(char **row)
-/* Load a trackTable from row fetched with select * from trackTable
- * from database.  Dispose of this with trackTableFree(). */
-{
-struct trackTable *ret;
-
-AllocVar(ret);
-ret->mapName = cloneString(row[0]);
-ret->tableName = cloneString(row[1]);
-ret->shortLabel = cloneString(row[2]);
-ret->longLabel = cloneString(row[3]);
-ret->visibility = sqlUnsigned(row[4]);
-ret->colorR = sqlUnsigned(row[5]);
-ret->colorG = sqlUnsigned(row[6]);
-ret->colorB = sqlUnsigned(row[7]);
-ret->altColorR = sqlUnsigned(row[8]);
-ret->altColorG = sqlUnsigned(row[9]);
-ret->altColorB = sqlUnsigned(row[10]);
-ret->useScore = sqlUnsigned(row[11]);
-ret->isSplit = sqlUnsigned(row[12]);
-ret->private = sqlUnsigned(row[13]);
-return ret;
-}
-
-struct trackTable *trackTableLoadAll(char *fileName) 
-/* Load all trackTable from a tab-separated file.
- * Dispose of this with trackTableFreeList(). */
-{
-struct trackTable *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[15];
-
-while (lineFileRow(lf, row))
-    {
-    el = trackTableLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct trackTable *trackTableCommaIn(char **pS, struct trackTable *ret)
-/* Create a trackTable out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new trackTable */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->mapName = sqlStringComma(&s);
-ret->tableName = sqlStringComma(&s);
-ret->shortLabel = sqlStringComma(&s);
-ret->longLabel = sqlStringComma(&s);
-ret->visibility = sqlUnsignedComma(&s);
-ret->colorR = sqlUnsignedComma(&s);
-ret->colorG = sqlUnsignedComma(&s);
-ret->colorB = sqlUnsignedComma(&s);
-ret->altColorR = sqlUnsignedComma(&s);
-ret->altColorG = sqlUnsignedComma(&s);
-ret->altColorB = sqlUnsignedComma(&s);
-ret->useScore = sqlUnsignedComma(&s);
-ret->isSplit = sqlUnsignedComma(&s);
-ret->private = sqlUnsignedComma(&s);
-*pS = s;
-return ret;
-}
-
-void trackTableFree(struct trackTable **pEl)
-/* Free a single dynamically allocated trackTable such as created
- * with trackTableLoad(). */
-{
-struct trackTable *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->mapName);
-freeMem(el->tableName);
-freeMem(el->shortLabel);
-freeMem(el->longLabel);
-freez(pEl);
-}
-
-void trackTableFreeList(struct trackTable **pList)
-/* Free a list of dynamically allocated trackTable's */
-{
-struct trackTable *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    trackTableFree(&el);
-    }
-*pList = NULL;
-}
-
-void trackTableOutput(struct trackTable *el, FILE *f, char sep, char lastSep) 
-/* Print out trackTable.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->mapName);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->tableName);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->shortLabel);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->longLabel);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->visibility);
-fputc(sep,f);
-fprintf(f, "%u", el->colorR);
-fputc(sep,f);
-fprintf(f, "%u", el->colorG);
-fputc(sep,f);
-fprintf(f, "%u", el->colorB);
-fputc(sep,f);
-fprintf(f, "%u", el->altColorR);
-fputc(sep,f);
-fprintf(f, "%u", el->altColorG);
-fputc(sep,f);
-fprintf(f, "%u", el->altColorB);
-fputc(sep,f);
-fprintf(f, "%u", el->useScore);
-fputc(sep,f);
-fprintf(f, "%u", el->isSplit);
-fputc(sep,f);
-fprintf(f, "%u", el->private);
-fputc(sep,f);
-}
-
-/* ---------------- End of AutoSQL generated code. ------------------ */
-
-static struct trackTable builtIns[] = 
-{
-    {
-     NULL,
-     "hgEst",	/* mapName */
-     "est",	/* tableName */
-     "Human ESTs",	/* shortLabel */
-     "Human ESTs",	/* longLabel */
-     0,	/* visibility */
-     0,0,0,	/* color */
-     0,0,0,	/* altColor */
-     0,	/* useScore */
-     0,	/* isSplit */
-     0,	/* private */
-    },
-    {
-     NULL,
-     "hgMrna",	/* mapName */
-     "mrna",	/* tableName */
-     "Full MGC mRNAs",	/* shortLabel */
-     "Full Length MGC mRNAs",	/* longLabel */
-     2,	/* visibility */
-     0,0,0,	/* color */
-     0,0,0,	/* altColor */
-     0,	/* useScore */
-     0,	/* isSplit */
-     0,	/* private */
-    },
-    {
-     NULL,
-     "BACends",	/* mapName */
-     "bacEnds",	/* tableName */
-     "BAC ends",	/* shortLabel */
-     "BAC end pairs",	/* longLabel */
-     0,	/* visibility */
-     0,0,0,	/* color */
-     0,0,0,	/* altColor */
-     0,	/* useScore */
-     0,	/* isSplit */
-     0,	/* private */
-    },
-    {
-     NULL,
-     "hgEst",	/* mapName */
-     "est",	/* tableName */
-     "Human ESTs",	/* shortLabel */
-     "Human ESTs",	/* longLabel */
-     0,	/* visibility */
-     0,0,0,	/* color */
-     0,0,0,	/* altColor */
-     0,	/* useScore */
-     1,	/* isSplit */
-     0,	/* private */
-    },
-    {
-     NULL,
-     "hgIntronEst",	/* mapName */
-     "intronEst",	/* tableName */
-     "Spliced ESTs",	/* shortLabel */
-     "Human ESTs That Have Been Spliced",	/* longLabel */
-     1,	/* visibility */
-     0,0,0,	/* color */
-     0,0,0,	/* altColor */
-     0,	/* useScore */
-     1,	/* isSplit */
-     0,	/* private */
-    },
-    {
-     NULL,
-     "hgMrna",	/* mapName */
-     "mrna",	/* tableName */
-     "Sequenced mRNAs",	/* shortLabel */
-     "Sequenced mRNAs from Genbank",	/* longLabel */
-     2,	/* visibility */
-     0,0,0,	/* color */
-     0,0,0,	/* altColor */
-     0,	/* useScore */
-     1,	/* isSplit */
-     0,	/* private */
-    },
-    {
-     NULL,
-     "hgRepeat",	/* mapName */
-     "rmsk",	/* tableName */
-     "RepeatMasker",	/* shortLabel */
-     "Repeating Elements by RepeatMasker",	/* longLabel */
-     1,	/* visibility */
-     0,0,0,	/* color */
-     0,0,0,	/* altColor */
-     1,	/* useScore */
-     1,	/* isSplit */
-     0,	/* private */
-    },
-    {
-     NULL,
-     "hgBlatMouse",	/* mapName */
-     "blatMouse",	/* tableName */
-     "Mouse Blat",	/* shortLabel */
-     "Mouse Translated Blat Alignments",	/* longLabel */
-     0,	/* visibility */
-     100,50,0,	/* color */
-     0,0,0,	/* altColor */
-     0,	/* useScore */
-     1,	/* isSplit */
-     0,	/* private */
-    },
-    {
-     NULL,
-     "hgContig",	/* mapName */
-     "ctgPos",	/* tableName */
-     "Chromosome Band",	/* shortLabel */
-     "Chromosome Bands Localized by FISH Mapping Clones",	/* longLabel */
-     1,	/* visibility */
-     150,0,0,	/* color */
-     0,0,0,	/* altColor */
-     0,	/* useScore */
-     0,	/* isSplit */
-     0,	/* private */
-    },
-    {
-     NULL,
-     "hgCytoBands",	/* mapName */
-     "cytoBand",	/* tableName */
-     "Chromosome Band",	/* shortLabel */
-     "Chromosome Bands Localized by FISH Mapping Clones",	/* longLabel */
-     1,	/* visibility */
-     0,0,0,	/* color */
-     150,50,50,	/* altColor */
-     0,	/* useScore */
-     0,	/* isSplit */
-     0,	/* private */
-    },
-    {
-     NULL,
-     "hgExoFish",	/* mapName */
-     "exoFish",	/* tableName */
-     "Exofish ecores",	/* shortLabel */
-     "Exofish Tetraodon/Human Conserved Regions (ecores)",	/* longLabel */
-     1,	/* visibility */
-     153,21,153,	/* color */
-     0,0,255,	/* altColor */
-     0,	/* useScore */
-     0,	/* isSplit */
-     0,	/* private */
-    },
-    {
-     NULL,
-     "hgGcPercent",	/* mapName */
-     "gcPercent",	/* tableName */
-     "GC Percent",	/* shortLabel */
-     "Percentage GC in 20,000 Base Windows",	/* longLabel */
-     0,	/* visibility */
-     0,0,0,	/* color */
-     0,0,0,	/* altColor */
-     0,	/* useScore */
-     0,	/* isSplit */
-     0,	/* private */
-    },
-    {
-     NULL,
-     "hgMusTest1",	/* mapName */
-     "musTest1",	/* tableName */
-     "Mouse Test 40",	/* shortLabel */
-     "Mouse Translated Blat Alignments Score > 40",	/* longLabel */
-     0,	/* visibility */
-     0,0,0,	/* color */
-     0,0,0,	/* altColor */
-     0,	/* useScore */
-     0,	/* isSplit */
-     1,	/* private */
-    },
-    {
-     NULL,
-     "hgRefGene",	/* mapName */
-     "refGene",	/* tableName */
-     "RefSeq Genes",	/* shortLabel */
-     "GenBank RefSeq Genes",	/* longLabel */
-     2,	/* visibility */
-     20,20,170,	/* color */
-     137,137,212,	/* altColor */
-     0,	/* useScore */
-     0,	/* isSplit */
-     0,	/* private */
-    },
-    {
-     NULL,
-     "hgRnaGene",	/* mapName */
-     "rnaGene",	/* tableName */
-     "RNA Genes",	/* shortLabel */
-     "Non-coding RNA Genes (dark) and Pseudogenes (light)",	/* longLabel */
-     2,	/* visibility */
-     170,80,130,	/* color */
-     230,180,130,	/* altColor */
-     0,	/* useScore */
-     0,	/* isSplit */
-     0,	/* private */
-    },
-    {
-     NULL,
-     "hgStsMarker",	/* mapName */
-     "stsMarker",	/* tableName */
-     "STS Markers",	/* shortLabel */
-     "STS Markers on Genetic (blue), FISH (green) and Radiation Hybrid (black) Maps",	/* longLabel */
-     1,	/* visibility */
-     0,0,0,	/* color */
-     128,128,255,	/* altColor */
-     1,	/* useScore */
-     0,	/* isSplit */
-     0,	/* private */
-    },
-};
-
-struct trackTable *hGetTracks(char *db)
-/* Get track table for specified database. */
-{
-struct trackTable *ttList = NULL, *tt;
-int i;
-char table[256];
-
-for (i=0; i<ArraySize(builtIns); ++i)
-    {
-    tt = builtIns+i;
-    if (tt->isSplit)
-       safef(table, sizeof(table), "chr22_%s", tt->tableName);
-    else
-       safef(table, sizeof(table), "%s", tt->tableName);
-    if (hTableExists(db, table))
-        {
-	slAddHead(&ttList, tt);
-	}
-    }
-slReverse(&ttList);
-return ttList;
-}
-