533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/transMapGene.c src/hg/lib/transMapGene.c
deleted file mode 100644
index 45e0802..0000000
--- src/hg/lib/transMapGene.c
+++ /dev/null
@@ -1,168 +0,0 @@
-/* transMapGene.c was originally generated by the autoSql program, which also 
- * generated transMapGene.h and transMapGene.sql.  This module links the database and
- * the RAM representation of objects. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "transMapGene.h"
-
-char *transMapGeneCommaSepFieldNames4 = "id,cds,db,geneName";   // previous version without geneId column
-char *transMapGeneCommaSepFieldNames = "id,cds,db,geneName,geneId";
-
-void transMapGeneStaticLoad(char **row, struct transMapGene *ret)
-/* Load a row from transMapGene table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-{
-
-ret->id = row[0];
-ret->cds = row[1];
-safecpy(ret->db, sizeof(ret->db), row[2]);
-ret->geneName = row[3];
-ret->geneId = row[4];
-}
-
-struct transMapGene *transMapGeneLoad(char **row)
-/* Load a transMapGene from row fetched with select * from transMapGene
- * from database.  Dispose of this with transMapGeneFree(). */
-{
-struct transMapGene *ret;
-
-AllocVar(ret);
-ret->id = cloneString(row[0]);
-ret->cds = cloneString(row[1]);
-safecpy(ret->db, sizeof(ret->db), row[2]);
-ret->geneName = cloneString(row[3]);
-ret->geneId = cloneString(row[4]);
-return ret;
-}
-
-struct transMapGene *transMapGeneLoadAll(char *fileName) 
-/* Load all transMapGene from a whitespace-separated file.
- * Dispose of this with transMapGeneFreeList(). */
-{
-struct transMapGene *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[5];
-
-while (lineFileRow(lf, row))
-    {
-    el = transMapGeneLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct transMapGene *transMapGeneLoadAllByChar(char *fileName, char chopper) 
-/* Load all transMapGene from a chopper separated file.
- * Dispose of this with transMapGeneFreeList(). */
-{
-struct transMapGene *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[5];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = transMapGeneLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct transMapGene *transMapGeneCommaIn(char **pS, struct transMapGene *ret)
-/* Create a transMapGene out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new transMapGene */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->id = sqlStringComma(&s);
-ret->cds = sqlStringComma(&s);
-sqlFixedStringComma(&s, ret->db, sizeof(ret->db));
-ret->geneName = sqlStringComma(&s);
-ret->geneId = sqlStringComma(&s);
-*pS = s;
-return ret;
-}
-
-void transMapGeneFree(struct transMapGene **pEl)
-/* Free a single dynamically allocated transMapGene such as created
- * with transMapGeneLoad(). */
-{
-struct transMapGene *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->id);
-freeMem(el->cds);
-freeMem(el->geneName);
-freeMem(el->geneId);
-freez(pEl);
-}
-
-void transMapGeneFreeList(struct transMapGene **pList)
-/* Free a list of dynamically allocated transMapGene's */
-{
-struct transMapGene *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    transMapGeneFree(&el);
-    }
-*pList = NULL;
-}
-
-void transMapGeneOutput(struct transMapGene *el, FILE *f, char sep, char lastSep) 
-/* Print out transMapGene.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->id);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->cds);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->db);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->geneName);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->geneId);
-if (sep == ',') fputc('"',f);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-
-struct transMapGene *transMapGeneQuery(struct sqlConnection *geneConn,
-                                       char *table, char *srcDb, char *srcId)
-/* load a single transMapSrc object for an srcDb and srcId from a table,
- * or return NULL if not found */
-{
-/* geneId field was added after original table definition.  Return empty string
- * in query for legacy tables. */
-if (sqlFieldIndex(geneConn, table, "geneId") >= 0)
-    return sqlQueryObjs(geneConn, (sqlLoadFunc)transMapGeneLoad,
-                        sqlQuerySingle,
-                        "SELECT %-s FROM %s WHERE (db=\"%s\") and (id = \"%s\")",
-                        transMapGeneCommaSepFieldNames, table, srcDb, srcId);
-else
-    return sqlQueryObjs(geneConn, (sqlLoadFunc)transMapGeneLoad,
-                        sqlQuerySingle,
-                        "SELECT %-s,\"\" FROM %s WHERE (db=\"%s\") and (id = \"%s\")",
-                        transMapGeneCommaSepFieldNames4, table, srcDb, srcId);
-}