533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/transRegCodeProbe.c src/hg/lib/transRegCodeProbe.c
deleted file mode 100644
index 3acb1f0..0000000
--- src/hg/lib/transRegCodeProbe.c
+++ /dev/null
@@ -1,190 +0,0 @@
-/* transRegCodeProbe.c was originally generated by the autoSql program, which also 
- * generated transRegCodeProbe.h and transRegCodeProbe.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "transRegCodeProbe.h"
-
-
-struct transRegCodeProbe *transRegCodeProbeLoad(char **row)
-/* Load a transRegCodeProbe from row fetched with select * from transRegCodeProbe
- * from database.  Dispose of this with transRegCodeProbeFree(). */
-{
-struct transRegCodeProbe *ret;
-
-AllocVar(ret);
-ret->tfCount = sqlUnsigned(row[4]);
-ret->chrom = cloneString(row[0]);
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = cloneString(row[3]);
-{
-int sizeOne;
-sqlStringDynamicArray(row[5], &ret->tfList, &sizeOne);
-assert(sizeOne == ret->tfCount);
-}
-{
-int sizeOne;
-sqlFloatDynamicArray(row[6], &ret->bindVals, &sizeOne);
-assert(sizeOne == ret->tfCount);
-}
-return ret;
-}
-
-struct transRegCodeProbe *transRegCodeProbeLoadAll(char *fileName) 
-/* Load all transRegCodeProbe from a whitespace-separated file.
- * Dispose of this with transRegCodeProbeFreeList(). */
-{
-struct transRegCodeProbe *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[7];
-
-while (lineFileRow(lf, row))
-    {
-    el = transRegCodeProbeLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct transRegCodeProbe *transRegCodeProbeLoadAllByChar(char *fileName, char chopper) 
-/* Load all transRegCodeProbe from a chopper separated file.
- * Dispose of this with transRegCodeProbeFreeList(). */
-{
-struct transRegCodeProbe *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[7];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = transRegCodeProbeLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct transRegCodeProbe *transRegCodeProbeCommaIn(char **pS, struct transRegCodeProbe *ret)
-/* Create a transRegCodeProbe out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new transRegCodeProbe */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->chrom = sqlStringComma(&s);
-ret->chromStart = sqlUnsignedComma(&s);
-ret->chromEnd = sqlUnsignedComma(&s);
-ret->name = sqlStringComma(&s);
-ret->tfCount = sqlUnsignedComma(&s);
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->tfList, ret->tfCount);
-for (i=0; i<ret->tfCount; ++i)
-    {
-    ret->tfList[i] = sqlStringComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->bindVals, ret->tfCount);
-for (i=0; i<ret->tfCount; ++i)
-    {
-    ret->bindVals[i] = sqlFloatComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-*pS = s;
-return ret;
-}
-
-void transRegCodeProbeFree(struct transRegCodeProbe **pEl)
-/* Free a single dynamically allocated transRegCodeProbe such as created
- * with transRegCodeProbeLoad(). */
-{
-struct transRegCodeProbe *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->chrom);
-freeMem(el->name);
-/* All strings in tfList are allocated at once, so only need to free first. */
-if (el->tfList != NULL)
-    freeMem(el->tfList[0]);
-freeMem(el->tfList);
-freeMem(el->bindVals);
-freez(pEl);
-}
-
-void transRegCodeProbeFreeList(struct transRegCodeProbe **pList)
-/* Free a list of dynamically allocated transRegCodeProbe's */
-{
-struct transRegCodeProbe *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    transRegCodeProbeFree(&el);
-    }
-*pList = NULL;
-}
-
-void transRegCodeProbeOutput(struct transRegCodeProbe *el, FILE *f, char sep, char lastSep) 
-/* Print out transRegCodeProbe.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chromStart);
-fputc(sep,f);
-fprintf(f, "%u", el->chromEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->tfCount);
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->tfCount; ++i)
-    {
-    if (sep == ',') fputc('"',f);
-    fprintf(f, "%s", el->tfList[i]);
-    if (sep == ',') fputc('"',f);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->tfCount; ++i)
-    {
-    fprintf(f, "%g", el->bindVals[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-