533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/lib/zdobnovSynt.c src/hg/lib/zdobnovSynt.c
deleted file mode 100644
index 64a560b..0000000
--- src/hg/lib/zdobnovSynt.c
+++ /dev/null
@@ -1,216 +0,0 @@
-/* zdobnovSynt.c was originally generated by the autoSql program, which also 
- * generated zdobnovSynt.h and zdobnovSynt.sql.  This module links the database and
- * the RAM representation of objects. */
-
-/* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "zdobnovSynt.h"
-
-
-struct zdobnovSynt *zdobnovSyntLoad(char **row)
-/* Load a zdobnovSynt from row fetched with select * from zdobnovSynt
- * from database.  Dispose of this with zdobnovSyntFree(). */
-{
-struct zdobnovSynt *ret;
-int sizeOne;
-
-AllocVar(ret);
-ret->blockCount = sqlSigned(row[9]);
-ret->chrom = cloneString(row[0]);
-ret->chromStart = sqlUnsigned(row[1]);
-ret->chromEnd = sqlUnsigned(row[2]);
-ret->name = cloneString(row[3]);
-ret->score = sqlUnsigned(row[4]);
-strcpy(ret->strand, row[5]);
-ret->thickStart = sqlUnsigned(row[6]);
-ret->thickEnd = sqlUnsigned(row[7]);
-ret->reserved = sqlUnsigned(row[8]);
-sqlSignedDynamicArray(row[10], &ret->blockSizes, &sizeOne);
-assert(sizeOne == ret->blockCount);
-sqlSignedDynamicArray(row[11], &ret->chromStarts, &sizeOne);
-assert(sizeOne == ret->blockCount);
-sqlStringDynamicArray(row[12], &ret->geneNames, &sizeOne);
-assert(sizeOne == ret->blockCount);
-return ret;
-}
-
-struct zdobnovSynt *zdobnovSyntLoadAll(char *fileName) 
-/* Load all zdobnovSynt from a whitespace-separated file.
- * Dispose of this with zdobnovSyntFreeList(). */
-{
-struct zdobnovSynt *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[13];
-
-while (lineFileRow(lf, row))
-    {
-    el = zdobnovSyntLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct zdobnovSynt *zdobnovSyntLoadAllByChar(char *fileName, char chopper) 
-/* Load all zdobnovSynt from a chopper separated file.
- * Dispose of this with zdobnovSyntFreeList(). */
-{
-struct zdobnovSynt *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[13];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = zdobnovSyntLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct zdobnovSynt *zdobnovSyntCommaIn(char **pS, struct zdobnovSynt *ret)
-/* Create a zdobnovSynt out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new zdobnovSynt */
-{
-char *s = *pS;
-int i;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->chrom = sqlStringComma(&s);
-ret->chromStart = sqlUnsignedComma(&s);
-ret->chromEnd = sqlUnsignedComma(&s);
-ret->name = sqlStringComma(&s);
-ret->score = sqlUnsignedComma(&s);
-sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
-ret->thickStart = sqlUnsignedComma(&s);
-ret->thickEnd = sqlUnsignedComma(&s);
-ret->reserved = sqlUnsignedComma(&s);
-ret->blockCount = sqlSignedComma(&s);
-s = sqlEatChar(s, '{');
-AllocArray(ret->blockSizes, ret->blockCount);
-for (i=0; i<ret->blockCount; ++i)
-    {
-    ret->blockSizes[i] = sqlSignedComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-s = sqlEatChar(s, '{');
-AllocArray(ret->chromStarts, ret->blockCount);
-for (i=0; i<ret->blockCount; ++i)
-    {
-    ret->chromStarts[i] = sqlSignedComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-s = sqlEatChar(s, '{');
-AllocArray(ret->geneNames, ret->blockCount);
-for (i=0; i<ret->blockCount; ++i)
-    {
-    ret->geneNames[i] = sqlStringComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-*pS = s;
-return ret;
-}
-
-void zdobnovSyntFree(struct zdobnovSynt **pEl)
-/* Free a single dynamically allocated zdobnovSynt such as created
- * with zdobnovSyntLoad(). */
-{
-struct zdobnovSynt *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->chrom);
-freeMem(el->name);
-freeMem(el->blockSizes);
-freeMem(el->chromStarts);
-/* All strings in geneNames are allocated at once, so only need to free first. */
-if (el->geneNames != NULL)
-    freeMem(el->geneNames[0]);
-freeMem(el->geneNames);
-freez(pEl);
-}
-
-void zdobnovSyntFreeList(struct zdobnovSynt **pList)
-/* Free a list of dynamically allocated zdobnovSynt's */
-{
-struct zdobnovSynt *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    zdobnovSyntFree(&el);
-    }
-*pList = NULL;
-}
-
-void zdobnovSyntOutput(struct zdobnovSynt *el, FILE *f, char sep, char lastSep) 
-/* Print out zdobnovSynt.  Separate fields with sep. Follow last field with lastSep. */
-{
-int i;
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chromStart);
-fputc(sep,f);
-fprintf(f, "%u", el->chromEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->score);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->strand);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->thickStart);
-fputc(sep,f);
-fprintf(f, "%u", el->thickEnd);
-fputc(sep,f);
-fprintf(f, "%u", el->reserved);
-fputc(sep,f);
-fprintf(f, "%d", el->blockCount);
-fputc(sep,f);
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->blockCount; ++i)
-    {
-    fprintf(f, "%d", el->blockSizes[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-fputc(sep,f);
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->blockCount; ++i)
-    {
-    fprintf(f, "%d", el->chromStarts[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-fputc(sep,f);
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->blockCount; ++i)
-    {
-    if (sep == ',') fputc('"',f);
-    fprintf(f, "%s", el->geneNames[i]);
-    if (sep == ',') fputc('"',f);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-