533112afe2a2005e80cdb1f82904ea65032d4302
braney
  Sat Oct 2 11:37:34 2021 -0700
split hg/lib into two separate libaries, one only used by the cgis

diff --git src/hg/cgilib/cgh.c src/hg/cgilib/cgh.c
new file mode 100644
index 0000000..220cdb6
--- /dev/null
+++ src/hg/cgilib/cgh.c
@@ -0,0 +1,146 @@
+/* cgh.c was originally generated by the autoSql program, which also 
+ * generated cgh.h and cgh.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
+#include "common.h"
+#include "linefile.h"
+#include "jksql.h"
+#include "cgh.h"
+
+
+void cghStaticLoad(char **row, struct cgh *ret)
+/* Load a row from cgh table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->chrom = row[0];
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = row[3];
+ret->score = atof(row[4]);
+ret->type = sqlUnsigned(row[5]);
+ret->tissue = row[6];
+ret->clone = row[7];
+ret->spot = sqlUnsigned(row[8]);
+}
+
+struct cgh *cghLoad(char **row)
+/* Load a cgh from row fetched with select * from cgh
+ * from database.  Dispose of this with cghFree(). */
+{
+struct cgh *ret;
+
+AllocVar(ret);
+ret->chrom = cloneString(row[0]);
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = cloneString(row[3]);
+ret->score = atof(row[4]);
+ret->type = sqlUnsigned(row[5]);
+ret->tissue = cloneString(row[6]);
+ret->clone = cloneString(row[7]);
+ret->spot = sqlUnsigned(row[8]);
+return ret;
+}
+
+struct cgh *cghLoadAll(char *fileName) 
+/* Load all cgh from a tab-separated file.
+ * Dispose of this with cghFreeList(). */
+{
+struct cgh *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[9];
+
+while (lineFileRow(lf, row))
+    {
+    el = cghLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct cgh *cghCommaIn(char **pS, struct cgh *ret)
+/* Create a cgh out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new cgh */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlUnsignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->score = sqlSignedComma(&s);
+ret->type = sqlUnsignedComma(&s);
+ret->tissue = sqlStringComma(&s);
+ret->clone = sqlStringComma(&s);
+ret->spot = sqlUnsignedComma(&s);
+*pS = s;
+return ret;
+}
+
+void cghFree(struct cgh **pEl)
+/* Free a single dynamically allocated cgh such as created
+ * with cghLoad(). */
+{
+struct cgh *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+freeMem(el->tissue);
+freeMem(el->clone);
+freez(pEl);
+}
+
+void cghFreeList(struct cgh **pList)
+/* Free a list of dynamically allocated cgh's */
+{
+struct cgh *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    cghFree(&el);
+    }
+*pList = NULL;
+}
+
+void cghOutput(struct cgh *el, FILE *f, char sep, char lastSep) 
+/* Print out cgh.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%f", el->score);
+fputc(sep,f);
+fprintf(f, "%u", el->type);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->tissue);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->clone);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->spot);
+fputc(lastSep,f);
+}
+