533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/cgilib/cnpSharp.c src/hg/cgilib/cnpSharp.c new file mode 100644 index 0000000..c3d9051 --- /dev/null +++ src/hg/cgilib/cnpSharp.c @@ -0,0 +1,195 @@ +/* cnpSharp.c was originally generated by the autoSql program, which also + * generated cnpSharp.h and cnpSharp.sql. This module links the database and + * the RAM representation of objects. */ + +/* Copyright (C) 2014 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + +#include "common.h" +#include "linefile.h" +#include "dystring.h" +#include "jksql.h" +#include "cnpSharp.h" + + +void cnpSharpStaticLoad(char **row, struct cnpSharp *ret) +/* Load a row from cnpSharp table into ret. The contents of ret will + * be replaced at the next call to this function. */ +{ + +ret->chrom = row[0]; +ret->chromStart = sqlUnsigned(row[1]); +ret->chromEnd = sqlUnsigned(row[2]); +ret->name = row[3]; +ret->variationType = row[4]; +ret->cytoName = row[5]; +ret->cytoStrain = row[6]; +ret->dupPercent = atof(row[7]); +ret->repeatsPercent = atof(row[8]); +ret->LINEpercent = atof(row[9]); +ret->SINEpercent = atof(row[10]); +ret->LTRpercent = atof(row[11]); +ret->DNApercent = atof(row[12]); +ret->diseaseSpotsPercent = atof(row[13]); +} + +struct cnpSharp *cnpSharpLoad(char **row) +/* Load a cnpSharp from row fetched with select * from cnpSharp + * from database. Dispose of this with cnpSharpFree(). */ +{ +struct cnpSharp *ret; + +AllocVar(ret); +ret->chrom = cloneString(row[0]); +ret->chromStart = sqlUnsigned(row[1]); +ret->chromEnd = sqlUnsigned(row[2]); +ret->name = cloneString(row[3]); +ret->variationType = cloneString(row[4]); +ret->cytoName = cloneString(row[5]); +ret->cytoStrain = cloneString(row[6]); +ret->dupPercent = atof(row[7]); +ret->repeatsPercent = atof(row[8]); +ret->LINEpercent = atof(row[9]); +ret->SINEpercent = atof(row[10]); +ret->LTRpercent = atof(row[11]); +ret->DNApercent = atof(row[12]); +ret->diseaseSpotsPercent = atof(row[13]); +return ret; +} + +struct cnpSharp *cnpSharpLoadAll(char *fileName) +/* Load all cnpSharp from a whitespace-separated file. + * Dispose of this with cnpSharpFreeList(). */ +{ +struct cnpSharp *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[14]; + +while (lineFileRow(lf, row)) + { + el = cnpSharpLoad(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct cnpSharp *cnpSharpLoadAllByChar(char *fileName, char chopper) +/* Load all cnpSharp from a chopper separated file. + * Dispose of this with cnpSharpFreeList(). */ +{ +struct cnpSharp *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[14]; + +while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) + { + el = cnpSharpLoad(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct cnpSharp *cnpSharpCommaIn(char **pS, struct cnpSharp *ret) +/* Create a cnpSharp out of a comma separated string. + * This will fill in ret if non-null, otherwise will + * return a new cnpSharp */ +{ +char *s = *pS; + +if (ret == NULL) + AllocVar(ret); +ret->chrom = sqlStringComma(&s); +ret->chromStart = sqlUnsignedComma(&s); +ret->chromEnd = sqlUnsignedComma(&s); +ret->name = sqlStringComma(&s); +ret->variationType = sqlStringComma(&s); +ret->cytoName = sqlStringComma(&s); +ret->cytoStrain = sqlStringComma(&s); +ret->dupPercent = sqlFloatComma(&s); +ret->repeatsPercent = sqlFloatComma(&s); +ret->LINEpercent = sqlFloatComma(&s); +ret->SINEpercent = sqlFloatComma(&s); +ret->LTRpercent = sqlFloatComma(&s); +ret->DNApercent = sqlFloatComma(&s); +ret->diseaseSpotsPercent = sqlFloatComma(&s); +*pS = s; +return ret; +} + +void cnpSharpFree(struct cnpSharp **pEl) +/* Free a single dynamically allocated cnpSharp such as created + * with cnpSharpLoad(). */ +{ +struct cnpSharp *el; + +if ((el = *pEl) == NULL) return; +freeMem(el->chrom); +freeMem(el->name); +freeMem(el->variationType); +freeMem(el->cytoName); +freeMem(el->cytoStrain); +freez(pEl); +} + +void cnpSharpFreeList(struct cnpSharp **pList) +/* Free a list of dynamically allocated cnpSharp's */ +{ +struct cnpSharp *el, *next; + +for (el = *pList; el != NULL; el = next) + { + next = el->next; + cnpSharpFree(&el); + } +*pList = NULL; +} + +void cnpSharpOutput(struct cnpSharp *el, FILE *f, char sep, char lastSep) +/* Print out cnpSharp. Separate fields with sep. Follow last field with lastSep. */ +{ +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->chrom); +if (sep == ',') fputc('"',f); +fputc(sep,f); +fprintf(f, "%u", el->chromStart); +fputc(sep,f); +fprintf(f, "%u", el->chromEnd); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->name); +if (sep == ',') fputc('"',f); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->variationType); +if (sep == ',') fputc('"',f); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->cytoName); +if (sep == ',') fputc('"',f); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->cytoStrain); +if (sep == ',') fputc('"',f); +fputc(sep,f); +fprintf(f, "%g", el->dupPercent); +fputc(sep,f); +fprintf(f, "%g", el->repeatsPercent); +fputc(sep,f); +fprintf(f, "%g", el->LINEpercent); +fputc(sep,f); +fprintf(f, "%g", el->SINEpercent); +fputc(sep,f); +fprintf(f, "%g", el->LTRpercent); +fputc(sep,f); +fprintf(f, "%g", el->DNApercent); +fputc(sep,f); +fprintf(f, "%g", el->diseaseSpotsPercent); +fputc(lastSep,f); +} + +/* -------------------------------- End autoSql Generated Code -------------------------------- */ +