533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/cgilib/contigAcc.c src/hg/cgilib/contigAcc.c new file mode 100644 index 0000000..8b940cb --- /dev/null +++ src/hg/cgilib/contigAcc.c @@ -0,0 +1,126 @@ +/* contigAcc.c was originally generated by the autoSql program, which also + * generated contigAcc.h and contigAcc.sql. This module links the database and + * the RAM representation of objects. */ + +/* Copyright (C) 2014 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + +#include "common.h" +#include "linefile.h" +#include "dystring.h" +#include "jksql.h" +#include "contigAcc.h" + + +void contigAccStaticLoad(char **row, struct contigAcc *ret) +/* Load a row from contigAcc table into ret. The contents of ret will + * be replaced at the next call to this function. */ +{ + +ret->contig = row[0]; +ret->acc = row[1]; +} + +struct contigAcc *contigAccLoad(char **row) +/* Load a contigAcc from row fetched with select * from contigAcc + * from database. Dispose of this with contigAccFree(). */ +{ +struct contigAcc *ret; + +AllocVar(ret); +ret->contig = cloneString(row[0]); +ret->acc = cloneString(row[1]); +return ret; +} + +struct contigAcc *contigAccLoadAll(char *fileName) +/* Load all contigAcc from a whitespace-separated file. + * Dispose of this with contigAccFreeList(). */ +{ +struct contigAcc *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[2]; + +while (lineFileRow(lf, row)) + { + el = contigAccLoad(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct contigAcc *contigAccLoadAllByChar(char *fileName, char chopper) +/* Load all contigAcc from a chopper separated file. + * Dispose of this with contigAccFreeList(). */ +{ +struct contigAcc *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[2]; + +while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) + { + el = contigAccLoad(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct contigAcc *contigAccCommaIn(char **pS, struct contigAcc *ret) +/* Create a contigAcc out of a comma separated string. + * This will fill in ret if non-null, otherwise will + * return a new contigAcc */ +{ +char *s = *pS; + +if (ret == NULL) + AllocVar(ret); +ret->contig = sqlStringComma(&s); +ret->acc = sqlStringComma(&s); +*pS = s; +return ret; +} + +void contigAccFree(struct contigAcc **pEl) +/* Free a single dynamically allocated contigAcc such as created + * with contigAccLoad(). */ +{ +struct contigAcc *el; + +if ((el = *pEl) == NULL) return; +freeMem(el->contig); +freeMem(el->acc); +freez(pEl); +} + +void contigAccFreeList(struct contigAcc **pList) +/* Free a list of dynamically allocated contigAcc's */ +{ +struct contigAcc *el, *next; + +for (el = *pList; el != NULL; el = next) + { + next = el->next; + contigAccFree(&el); + } +*pList = NULL; +} + +void contigAccOutput(struct contigAcc *el, FILE *f, char sep, char lastSep) +/* Print out contigAcc. Separate fields with sep. Follow last field with lastSep. */ +{ +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->contig); +if (sep == ',') fputc('"',f); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->acc); +if (sep == ',') fputc('"',f); +fputc(lastSep,f); +} + +/* -------------------------------- End autoSql Generated Code -------------------------------- */ +