533112afe2a2005e80cdb1f82904ea65032d4302 braney Sat Oct 2 11:37:34 2021 -0700 split hg/lib into two separate libaries, one only used by the cgis diff --git src/hg/cgilib/ctgPos2.c src/hg/cgilib/ctgPos2.c new file mode 100644 index 0000000..6ab504d --- /dev/null +++ src/hg/cgilib/ctgPos2.c @@ -0,0 +1,148 @@ +/* ctgPos2.c was originally generated by the autoSql program, which also + * generated ctgPos2.h and ctgPos2.sql. This module links the database and + * the RAM representation of objects. */ + +/* Copyright (C) 2014 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + +#include "common.h" +#include "linefile.h" +#include "dystring.h" +#include "jksql.h" +#include "ctgPos2.h" + + +void ctgPos2StaticLoad(char **row, struct ctgPos2 *ret) +/* Load a row from ctgPos2 table into ret. The contents of ret will + * be replaced at the next call to this function. */ +{ + +ret->contig = row[0]; +ret->size = sqlUnsigned(row[1]); +ret->chrom = row[2]; +ret->chromStart = sqlUnsigned(row[3]); +ret->chromEnd = sqlUnsigned(row[4]); +strcpy(ret->type, row[5]); +} + +struct ctgPos2 *ctgPos2Load(char **row) +/* Load a ctgPos2 from row fetched with select * from ctgPos2 + * from database. Dispose of this with ctgPos2Free(). */ +{ +struct ctgPos2 *ret; + +AllocVar(ret); +ret->contig = cloneString(row[0]); +ret->size = sqlUnsigned(row[1]); +ret->chrom = cloneString(row[2]); +ret->chromStart = sqlUnsigned(row[3]); +ret->chromEnd = sqlUnsigned(row[4]); +strcpy(ret->type, row[5]); +return ret; +} + +struct ctgPos2 *ctgPos2LoadAll(char *fileName) +/* Load all ctgPos2 from a whitespace-separated file. + * Dispose of this with ctgPos2FreeList(). */ +{ +struct ctgPos2 *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[6]; + +while (lineFileRow(lf, row)) + { + el = ctgPos2Load(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct ctgPos2 *ctgPos2LoadAllByChar(char *fileName, char chopper) +/* Load all ctgPos2 from a chopper separated file. + * Dispose of this with ctgPos2FreeList(). */ +{ +struct ctgPos2 *list = NULL, *el; +struct lineFile *lf = lineFileOpen(fileName, TRUE); +char *row[6]; + +while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) + { + el = ctgPos2Load(row); + slAddHead(&list, el); + } +lineFileClose(&lf); +slReverse(&list); +return list; +} + +struct ctgPos2 *ctgPos2CommaIn(char **pS, struct ctgPos2 *ret) +/* Create a ctgPos2 out of a comma separated string. + * This will fill in ret if non-null, otherwise will + * return a new ctgPos2 */ +{ +char *s = *pS; + +if (ret == NULL) + AllocVar(ret); +ret->contig = sqlStringComma(&s); +ret->size = sqlUnsignedComma(&s); +ret->chrom = sqlStringComma(&s); +ret->chromStart = sqlUnsignedComma(&s); +ret->chromEnd = sqlUnsignedComma(&s); +sqlFixedStringComma(&s, ret->type, sizeof(ret->type)); +*pS = s; +return ret; +} + +void ctgPos2Free(struct ctgPos2 **pEl) +/* Free a single dynamically allocated ctgPos2 such as created + * with ctgPos2Load(). */ +{ +struct ctgPos2 *el; + +if ((el = *pEl) == NULL) return; +freeMem(el->contig); +freeMem(el->chrom); +freez(pEl); +} + +void ctgPos2FreeList(struct ctgPos2 **pList) +/* Free a list of dynamically allocated ctgPos2's */ +{ +struct ctgPos2 *el, *next; + +for (el = *pList; el != NULL; el = next) + { + next = el->next; + ctgPos2Free(&el); + } +*pList = NULL; +} + +void ctgPos2Output(struct ctgPos2 *el, FILE *f, char sep, char lastSep) +/* Print out ctgPos2. Separate fields with sep. Follow last field with lastSep. */ +{ +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->contig); +if (sep == ',') fputc('"',f); +fputc(sep,f); +fprintf(f, "%u", el->size); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->chrom); +if (sep == ',') fputc('"',f); +fputc(sep,f); +fprintf(f, "%u", el->chromStart); +fputc(sep,f); +fprintf(f, "%u", el->chromEnd); +fputc(sep,f); +if (sep == ',') fputc('"',f); +fprintf(f, "%s", el->type); +if (sep == ',') fputc('"',f); +fputc(lastSep,f); +} + +/* -------------------------------- End autoSql Generated Code -------------------------------- */ +